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AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
Processing-In-Memory acceleration of Breadth-First Search on DPUs.
Code for distributed inference of WNN on the UPMEM PiM System
Distributed Training on the UPMEM PiM system
Implementation of WNNs on the UPMEM PiM system. This implementation is optimizing for MRAM utilization.