smith-waterman-alignment

There are 2 repositories under smith-waterman-alignment topic.

BioJulia / BioAlignments.jl
Sequence alignment tools
bam-files sam-files sequence-alignment sequence-analysis dna-sequences biology bioinformatics smith-waterman-alignment high-throughput-sequencing biojulia
Language:Julia 58
kyu999 / ssw_aligner
Python implementation of Striped Smith-Waterman Algorithm
smith-waterman-alignment bio bioinformatics local-alignment
Language:C 24
shehio / Computational-Biology
computational-biology smith-waterman smith-waterman-alignment gillespie-algorithm gillespie gradient-descent gradient-descent-algorithm gradient-descent-implementation genome-analysis genome-alignment differential-analysis gene-expression alternative-splicing differential-expression differential-expression-analysis single-cell-analysis single-cell-genomics viterbi-algorithm viterbi-decoder bowtie2
Language:Jupyter Notebook 6
mgfzemor / Pairwise-sequence-Aligment-Tool
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
sequence-alignment pairwise needleman-wunsh smith-waterman needleman-wunsch-algorithm local-alignment global-alignment smith-waterman-alignment proteins amino-acids
Language:HTML 4
Enescigdem / SequenceAlignment
Global and Local Sequence Alignment
needleman-wunsch needleman-wunsch-algorithm smith-waterman smith-waterman-alignment global-alignment local-alignment bioinformatics
Language:Python 3
poke1024 / simileco
A header-only templated C++17-library for fast and versatile sequence alignment computations.
sequence-alignment needleman-wunsch-algorithm smith-waterman-algorithm smith-waterman-alignment
Language:C++ 3
Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
psa pairwise-alignment sequence sequence-alignment r fasta fasta-sequences biostrings similarity-score similarity-matrix drug-discovery dti dti-prediction protein protein-sequences smith-waterman smith-waterman-alignment computer-aided-drug-design computational-biology local-alignment
Language:R 1
Howeng98 / Smith_Waterman_parallel
Implement parallel Smith Waterman algorithm on CUDA
smith-waterman-alignment smith-waterman-algorithm smith-waterman needleman-wunsch needleman-wunsch-algorithm cuda-programming cuda parallel-programming
Language:Cuda 1
m-walid / Bioinformatics-Alignment-Algorithms
bioinformatics needleman-wunsch smith-waterman algorithms dot-matrix needleman-wunsch-algorithm smith-waterman-alignment
Language:JavaScript 1
marco-ruiz / pairwise-sequence-aligner
Applications that compute pairwise alignments of two biological sequences
bioinformatics dynamic-programming pairwise-alignment sequence-alignment smith-waterman-alignment spring-boot swing
Language:Java 1
rameziophobia / bioinformatics-algorithms
implementation and visualizations for sequence alignment algorithms
needleman-wunsch dot-plot smith-waterman react reactjs algorithms bioinformatics needleman needleman-wunsch-algorithm smith-waterman-alignment alignment
Language:JavaScript 1
alignment-web-app
vanleiko / alignment-web-app
Web App para alinhamento de sequências de DNA
alinhamento-global alinhamento-local smith-waterman-alignment needleman-wunsch-algorithm align-dna-sequences python streamlit webapp
1
AhmadAymanBahaa / Bioinformatics
Sequence Alignment Algorithms: Dot Matrix Representation, Needleman-Wunsch Algorithm, and Smith-Waterman Algorithm.
bioinformatics bioinformatics-field dot-matrix needleman-wunsch needleman-wunsch-algorithm sequence-alignment smith-waterman-algorithms smith-waterman-alignment
Language:Jupyter Notebook 0
azoz158-zz / Smith-Waterman-algorithm-java-implementation
Smith Waterman algorithm Java implementation
java multithreading smith-waterman-alignment
Language:Java 0
GennariAl / Smith-Waterman-with-R
I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.
local-alignment r-package r-programming sequence-alignment smith-waterman-alignment
Language:HTML 0
iamandreatonina / Algorithms_bioinformatics
:computer: Project for the course of Algorithms for Bioinformtics
local-alignment local-alignments smith-waterman smith-waterman-alignment
Language:Python 0
jeremyButtler / alnSeq
AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg. It can run as a standalone or as a library for python.
align alignment hirschberg needleman-wunsch python python-library sequence-alignment smith-waterman smith-waterman-algorithm smith-waterman-alignment waterman
Language:C 0
olledejong / Sequence-Alignment
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
needleman-wunsch needleman-wunsch-algorithm sequence-alignment smith-waterman smith-waterman-algorithm smith-waterman-alignment needleman-wunsch-alignment global-alignment local-alignment
Language:C++ 0
zhukovanadezhda / smith-waterman
🧬🔍 Smith-Waterman pairwise sequences alignment ✍️🔡
alignment blosum-matrix dna-sequences sequence-alignment smith-waterman smith-waterman-alignment
Language:C 0
iglee / smith-waterman
Implementation of Smith-Waterman local alignment model- find closest local alignments in two given amino acid sequences. BLOSUM was used as the scoring matrix.
computational-biology dynamic-programming sequence-modeling smith-waterman-alignment
Language:Python
madisonlondon / Nucleotide-Alignment
This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.
nucleotide-alignment nucleotide-sequence smith-waterman smith-waterman-alignment
mcclowes / smith-waterman-alignment
Smith-Waterman alignment implementation
smith-waterman-alignment local-alignments algorithm bioinformatics
Language:Python
sonechkina / SmithWaterman
R package for global alignment between two genomic sequences
r bioinformatics genomics r-package smith-waterman-algorithm smith-waterman-alignment devtools global-alignment
Language:R

smith-waterman-alignment

BioJulia / BioAlignments.jl

kyu999 / ssw_aligner

shehio / Computational-Biology

mgfzemor / Pairwise-sequence-Aligment-Tool

Enescigdem / SequenceAlignment

poke1024 / simileco

Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score

Howeng98 / Smith_Waterman_parallel

m-walid / Bioinformatics-Alignment-Algorithms

marco-ruiz / pairwise-sequence-aligner

rameziophobia / bioinformatics-algorithms

vanleiko / alignment-web-app

AhmadAymanBahaa / Bioinformatics

azoz158-zz / Smith-Waterman-algorithm-java-implementation

GennariAl / Smith-Waterman-with-R

iamandreatonina / Algorithms_bioinformatics

jeremyButtler / alnSeq

olledejong / Sequence-Alignment

zhukovanadezhda / smith-waterman

iglee / smith-waterman

madisonlondon / Nucleotide-Alignment

mcclowes / smith-waterman-alignment

sonechkina / SmithWaterman