Edinburgh-Genome-Foundry

Edinburgh Genome Foundry's repositories

DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Language:PythonMIT545 19 69

pdf_reports

:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug

Language:PythonMIT211 15 19

DnaChisel

:pencil2: A versatile DNA sequence optimizer

Language:PythonMIT209 10 49

blabel

:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies

Language:PythonMIT158 8 24

DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Language:PythonMIT49 9 14

Plateo

🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more

Language:PythonMIT39 8 2

Geneblocks

:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

Language:PythonMIT36 7 7

Primavera

:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.

Language:PythonMIT33 100

crazydoc

Read DNA sequences from colourful Microsoft Word documents

Language:PythonMIT31 60

DnaWeaver

A route planner for DNA assembly

Language:PythonMIT28 6 12

Caravagene

🎨 Python library to plot multi-part genetic constructs

Language:PythonMIT24 60

genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

Language:PythonNOASSERTION21 40

CUBA

🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software

Language:VueMIT19 5 4

BandWitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

Language:PythonMIT16 60

SnapGeneReader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

Language:PythonMIT16 60

bioprinter

🖨️ Print pictures with living micro-organisms !

Language:PythonMIT13 4 3

GoldenHinges

:link: Short overhangs design for DNA assembly

Language:PythonMIT11 8 5

Sequeduct

Sequencing analysis pipeline

Language:NextflowGPL-3.09 6 1

easy_dna

:school_satchel: Python library to read, write, edit DNA sequences

Language:PythonMIT6 3 5

Examples

Collection of Python modules and Jupyter notebook examples

Language:HTMLMIT6 40

Dioscuri

Python package for working with Gemini WorkList (gwl) files

Language:PythonMIT3 50

Ediacara

Python package for interpreting sequencing data of assembled DNA constructs (plasmids)

Language:PythonGPL-3.03 50

Polymera

Polymera is a Python package for representing ambiguous sequences written with complement alphabets.

Language:PythonMIT3 50

DnaWeaver-online

A web app for DNA Weaver

Language:VueNOASSERTION2 40

OT2Metclo

MSc project

Language:Python2 3 1

Overhang

Compendium of overhangs

Language:PythonMIT2 50

Sequeduct_demo

Demonstration data for the Sequeduct pipeline

Language:HTML2 20

egf-codons-website

:books: Sources of the EGF Codons website, written with Vue.js

Language:Vue1 60

EGF_Docker_Jupyter

Docker Jupyter images with (almost) all EGF packages

Language:DockerfileMIT1 30

Plater

Package for generating picklist files

Language:PythonMIT020