Oxford Nanopore Technologies

dorado

Oxford Nanopore's Basecaller

medaka

Sequence correction provided by ONT Research

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

fast-ctc-decode

Blitzing Fast CTC Beam Search Decoder

remora

Methylation/modified base calling separated from basecalling.

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

modkit

A bioinformatics tool for working with modified bases

pod5-file-format

Pod5: a high performance file format for nanopore reads.

read_until_api

Read Until client library for Nanopore Sequencing

rerio

Research release basecalling models and configurations

pomoxis

Analysis components from Oxford Nanopore Research

minknow_api

Protobuf and gRPC specifications for the MinKNOW API

kmer_models

Predictive kmer models for development use

duplex-tools

Splitting of sequence reads by internal adapter sequence search

pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

pyspoa

Python bindings to spoa

DTR-phage-pipeline

homebrew-tap

Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

Clair3

Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling

ont-minimap2

Cross platform builds for minimap2

hatch-protobuf

Hatch plugin for generating Python files from Protocol Buffers .proto files

data-rambler

An experimental language for a JSON query, transformation and streaming

onesie

A Linux device-driver for the MinION-mk1C

lc23-poster-avian-flu

linux-minit-nvidia

ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.

linux4.9-minit

ONT fork of Linux for NVIDIA Tegra based devices

sqlpad

Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowflake, BigQuery, SQLite, and more with ODBC

u-boot