nucleotide-diversity

There are 0 repository under nucleotide-diversity topic.

• SNPGenie

  chasewnelson / SNPGenie

  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

  snp-reportfasta-sequencesnext-generation-sequencingdnds-estimationdndsnucleotidediversity-measurementnucleotide-diversitysequence-analysispopulation-geneticsevolutionmolecular-evolutionevolutionary-parameterssubstitution-ratenei-gojoborinatural-selectionvcfvcf-filesperl
  Language:Perl 100

• chasewnelson / Soni-response

  Scripts, analysis code, input data, and intermediate files for response to Soni et al.

  covid-19diversityevolutionevolutionary-simulationintrahostintrahost-genetic-diversitynatural-selectionnucleotidenucleotide-diversitysars-cov-2slim
  Language:R 1

• MafaldaSFerreira / Atlherr_inversion_evol

  Evolutionary genomics of chromosomal inversions in Atlantic herring

  dnds-estimationdxyevolutionary-biologyfstgatk4genomicsgenotypeinversionslong-readsnucleotide-diversitypcaphylogenomicsrecombinationshort-readssite-frequency-spectrumtransposable-elementswhole-genome-alignment
  Language:R 1

• zhuochenbioinfo / hetPi

  Nucleotide diversity estimation using VCF input with special treatment for heterozygous genotypes

  nucleotide-diversitypopulation-genetics
  Language:Perl