yuanx749

py-cdhit

A Python package for CD-HIT, clustering protein or nucleotide sequences.

config-argument-parser

A package to help automatically create command-line interface from configuration or code.

complex_systems

A Python package for studying complex systems.

docker-flask-redis-celery

Docker Compose template for web application.

phasty

A Python interface for PHAST (phylogenetic analysis with space/time models).

2048-ai-tk

2048 AI in Python with GUI.

auto-sphinx-page-action

GitHub action that creates website using Sphinx.

bcell

A framework for linear B-cell epitope prediction and classification. (ECML PKDD 2023)

deep-vaccine

Predict multi-epitope vaccine subunit candidates using NLP.

genome_analysis

Genome analysis labs.

vae-mixin-pytorch

Variational autoencoders as mixins.

config-argument-parser-docs

Docs of config-argument-parser.

master-thesis

The code for my master's degree project.

matplotlib

matplotlib: plotting with Python

n-body

N-body simulation with quadtree, OpenMP parallelized.

numpy

The fundamental package for scientific computing with Python.

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pyprobml

Python code for "Probabilistic Machine learning" book by Kevin Murphy

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

pytorch_geometric

Graph Neural Network Library for PyTorch

repositories-list

A list of my public repos.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scikit-learn

scikit-learn: machine learning in Python

scipy

SciPy library main repository

shap

A game theoretic approach to explain the output of any machine learning model.

yuanx749

yuanx749.github.io