hmmer3

There are 0 repository under hmmer3 topic.

althonos / pyhmmer
Cython bindings and Python interface to HMMER3.
bioinformatics cython-library hidden-markov-model hmmer hmmer3 python-bindings python-library sequence-analysis
Language:Cython 119
faylward / viralrecall
Detection of NCLDV signatures in 'omic data
ncldv viruses genomics viral-signatures hmmer3 viral-regions nucleocytoviricota
Language:Python 30
laelbarlow / amoebae
Workflow for identifying and classifying homologous gene/protein sequences
bioinformatics hmmer3 biopython python3 blast genome-annotation similarity-search coulson-plot transcriptome-annotation snakemake-workflow comparative-genomics homology molecular-evolution gene-families protein-families orthology
Language:Python 20
AaronFeller / Cinful_v2
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
antimicrobial-peptides bacterial-genome-analysis bioinformatics-pipeline blast hidden-markov-model hmm hmmer hmmer3 search microcin
Language:Jupyter Notebook 0
furacca / brivez
Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.
fasta hmmer3 bioinformatic-tools protein protein-domains python3 transcriptome transcriptome-analysis deepsig bash-script
Language:Python 0
laelbarlow / jackhmmerer
A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.
similarity-search homology-search snakemake-workflow hmmer3 jackhmmer evalue-thresholds protein-sequences
Language:Python 0