seqan

There are 0 repository under seqan topic.

seqan / seqan
SeqAn's official repository.
cpp14 bioinfomatics high-performance simd sequence-alignments alignment bwt indexing suffixarray htslib sam-bam fasta fastq-format blast seqan
Language:C++ 458
seqan3
seqan / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
sequence-analysis seqan cpp17 cpp20 cpp-concepts bioinformatics blast sequence-alignment fasta fastq samtools fm-index modern
Language:C++ 390
seqan / lambda
LAMBDA – the Local Aligner for Massive Biological DatA
bioinformatics blast blast-searches ncbi-taxonomy alignment metagenomics protein-sequences high-performance seqan
Language:C++ 74
smehringer / SViper
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
genetics decode-genetics long-reads correction structural-variation seqan
Language:C++ 32
iosonofabio / seqanpy
Fast pairwise sequence alignment using SeqAn, in Python.
seqan swig python python-wrapper sequence-alignment pairwise-alignment
Language:C++ 13
UDC-GAC / pato
PATO: high PerformAnce TriplexatOr is a high performance tool for the fast and efficient detection of triple helices and triplex features in nucleotide sequences
lncrna parallelism triplex lncrna-dna high-performance bioinformatics parallel openmp seqan
Language:C++ 9
biocpp / biocpp-io
BioC++ Input/Output library
biocpp fasta fastq fastq-format bcf bcftools biopython cplusplus-20 fasta-format header-only modern-cpp seqan sequence-analysis vcf vcf-format csv input-output tsv c-plus-plus
Language:C++ 8
brendane / bltools
Unix-style text manipulation tools for biological sequence data.
bioinformatics biological-sequences c-plus-plus-14 command-line fasta fastq genetics grep head seqan sequences tail unix unix-philosophy unix-style
Language:C++ 0
no-materials / SeqAnRef
Common How-Tos using the NGS C++ library SeqAn
bioinformatics seqan
Language:C++ 0
martinjvickers / write_sam_from_stream
Writing a SAM file from a stream of data
bam io sam seqan
Language:C++
qPCR4vir / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics blast cpp-concepts cpp20 fasta fastq samtools seqan sequence-alignment sequence-analysis
Language:C++