Ebedthan

sabreur

fast, reliable and handy demultiplexing tool for fastx files

xgt

Efficient and fast querying and parsing of GTDB's data

hkgfinder

Find housekeeping genes in prokaryotic (meta)genomic data

hyperex

Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.

corebiota

Probabilistic partition of count data to identify core species

fastchaos

(Integer) chaos game representation for DNA sequences

aebou_blog

My personnal website

darwin

Create (rapid) neighbor-joining tree from sequences using mash distance

rust-catfish

Read and Write Catfish files

align-rs

arc

arewebioyet.github.io

Rust in bioinformatics and computational biology

bakta-web-ui

UI for Bakta web app

bgzip-rs

bgzip support for Rust

clap

A full featured, fast Command Line Argument Parser for Rust

containers

Bioinformatics containers

cutadapt

Cutadapt removes adapter sequences from sequencing reads

datamashphage

ebedthan.github.io

Personal website

ggplot2

An implementation of the Grammar of Graphics in R

git-cliff

A highly customizable Changelog Generator that follows Conventional Commit specifications ⛰️

mashphage

Fast and accurate whole-genome clustering of (actino) bacteriophages

mbdr

Modelling biological data with R

new-git-project

niffler

Simple and transparent support for compressed files.

rhizoserver

The rhizobia server

rhizosolver

RhizoSolver classifies 16s rRNA sequences into the Rhizobiales genus.

rust-bloom-filter

A fast Bloom filter implementation in Rust

rust-msbwt

place for building up a msbwt resource in Rust

test