dnds-estimation

There are 0 repository under dnds-estimation topic.

SNPGenie
chasewnelson / SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
snp-report fasta-sequences next-generation-sequencing dnds-estimation dnds nucleotide diversity-measurement nucleotide-diversity sequence-analysis population-genetics evolution molecular-evolution evolutionary-parameters substitution-rate nei-gojobori natural-selection vcf vcf-files perl
Language:Perl 100
drostlab / orthologr
Genome wide orthology inference and dNdS estimation
blast-searches orthology-inference comparative-genomics-studies genomics sequence-alignments blast comparative dnds-estimation codon-alignment r entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Language:R 84
OLGenie
chasewnelson / OLGenie
Program for estimating dN/dS in overlapping genes (OLGs)
dnds-estimation dnds nei-gojobori overlapping-genes overlapping molecular-evolution selection natural-selection purifying-selection positive-selection neutral-evolution perl
Language:Perl 12
ChrisCreevey / crann
Fast heuristic methods of detecting adaptive evolution in protein-coding genes.
adaptive-evolution alignment bioinformatics dnds-estimation evolution evolutionary-algorithms positive-selection protein-coding-genes
Language:C 4
kullrich / MSA2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
bioconductor-package dnds dnds-estimation iupac multiple-sequence-alignment r score-matrix kaks msa2dist bioinformatics
Language:C++ 4
kullrich / CRBHits
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
bioinformatics dnds dnds-estimation kaks last pairwise-comparison r r-package reciprocal-blast-hits synteny joss
Language:HTML 2
philippmuench / eden
EDEN: evolutionary dynamics within environments
metagenomics visualization dnds-estimation dnds evolution
Language:Python 1
philippmuench / eden_ui
the user interface for EDEN - Evolutionary Dynamics within Environments
dnds dnds-estimation molecular-dynamics selection
Language:CSS