abricate

There are 0 repository under abricate topic.

• raymondkiu / bactspeciesID

  Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies

  species-identification16s-rrnaabricatebarrnapmicrobial-genomicsgenome-assemblycontamination-detectionspecies-identity
  Language:Shell 3

• IbrahimElzahaby / Erasmus_MC_Internship

  Plasmidome analysis to track the transfer route of AMR genes in bacteria

  fasta-sequencesplasmidfinderprokkarefseq-genbankrgipanarooabricateamr-detectionvirulence-genesantimicrobial-genes-annotationantimicrobial-resistance-genes
  Language:Jupyter Notebook 1

• raymondkiu / TOXIper

  Toxinotype assignment of Clostridium perfringens via ABRicate

  perfringenstoxinotypingtoxinotypeclostridiumtoxinotype-assignmentabricate
  Language:Shell 1

• PopovIILab / BatShotMetaFlow

  🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics

  abricatealpha-diversitybeta-diversityblastdifferential-abundance-analysesfastanifastq-fileshumann3kraken2lab-journalmaaslin2microbial-communitiesphylogeneticsprokkaquastrefseqshotgun-metagenomicsspadesvirsorter2
  Language:HTML 0

• ikergarcia1996 / Gene2Tab

  This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

  abricategenomic-data-analysisgenomicsgenomics-visualizationtable
  Language:Python