mass-spectrometry
There are 38 repositories under mass-spectrometry topic.
- Language:C++ 456
- sageLanguage:Rust 198
sneumann / xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
Language:R 173matchms / matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
Language:Python 166Nesvilab / FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Language:Java 165- Language:HTML 158
- Language:Python 155
bittremieux / spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
Language:Python 124- Language:R 120
- philosopher
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
Language:Go 108 Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Language:HTML 93- Language:Python 91
ElucidataInc / ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
Language:C++ 85lgatto / RforProteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
Language:TeX 82- Language:Java 77
MannLabs / alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
Language:Python 76boecker-lab / sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Language:Java 75An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
Language:Jupyter Notebook 72frallain / pymsfilereader
Thermo MSFileReader Python bindings
Language:Python 66MassBank / MassBank-data
Official repository of open data MassBank records
tubanlee / MM
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Language:R 59- Language:Python 57
sgibb / MALDIquant
Quantitative Analysis of Mass Spectrometry Data
Language:R 57- Language:R 56
rickhelmus / patRoon
Workflow solutions for mass-spectrometry based non-target analysis.
Language:R 54- Language:Python 52
- depthcharge
wfondrie / depthcharge
A deep learning toolkit for mass spectrometry
Language:Python 51 sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Language:Java 50CCMS-UCSD / GNPS_Workflows
Public Workflows at GNPS
Language:HTML 50- Language:R 50
- Language:Python 50
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
Language:Jupyter Notebook 48EMSL-Computing / CoreMS
CoreMS is a comprehensive mass spectrometry software framework
Language:Python 46xieguigang / mzkit
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
Language:Visual Basic .NET 46ursgal / ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Language:Python 42ProteomicsML / ProteomicsML
Community-curated tutorials and datasets for ML in proteomics
Language:Jupyter Notebook 40
