Shane Kuei-Hsien Chu's repositories
SeqShuffle.jl
Shuffle the string sequences such that the k-mer frequency is preserved in each string
FastaLoader.jl
Load fasta files that contain DNA strings and process it for other downstream tasks
MotifPvalue.jl
Threshold and p-value computations for Position Weight Matrices
UnfoldCDL.jl
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
CDLmotif.jl-1
Discover DNA sequence motifs using convolutional dictionary learning
DeepUnfoldedCDLMotif.jl
Unfolded convolutional learning for motif discovery
EM-toy-examples
A toy example to visualize expectation maximization on a mixture of Gaussian
GaussianProcesses.jl
A Julia package for Gaussian Processes
genomic_benchmark_datasets
quick and dirty script to download the DNA classification dataset and make them to fasta files
FastaProcessing.jl
Fasta file processing for Chip/Clip/MPRA datasets
kchu25.github.io
research
MatrixMerge.jl
Using a population of profiles to approximate the real motifs
MOODS
MOODS: Motif Occurrence Detection Suite
SeqLogo.jl
render position weight matrices for DNA or RNA motifs
Sparse-Index-Tracking
Simple implementation to solve the sparse financial index tracking problem with ADMM
tensor-methods
Tensor decomposition for (symmetric/asymmetric tensor power iterations) for some latent variable models
wustl-latex-dissertation-template
LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.