pairwise-alignment
There are 1 repository under pairwise-alignment topic.
- Language:Jupyter Notebook 36
quim0 / WFA-GPU
GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
Language:C 34aziele / pairwise-sequence-alignment
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
Language:Python 13iosonofabio / seqanpy
Fast pairwise sequence alignment using SeqAn, in Python.
Language:C++ 13orangeSi / bam2msa
convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
Language:Crystal 11nf-core / pairgenomealign
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Language:Nextflow 8odoluca / Fast-NW-and-SW-Pairwise-alignment-using-numba-JIT
This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
Language:Python 3pairwise-alignment / pa-types
Basic types and functions for pairwise alignment.
Language:Rust 3danielezeobinna / Genomic-Sequence-Comparison-Code-GSCC-
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
Language:Python 2- Language:Python 2
Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
Language:R 1Ensembl / sam-alignment-reconstructor
SAM Alignment Reconstructor
Language:Python 1gpmerola / SimplePairwiseAlignment
This repository contains a simple implementation of a pairwise alignment algorithm for FASTA files using the Needleman-Wunsch algorithm.
Language:C++ 1marco-ruiz / pairwise-sequence-aligner
Applications that compute pairwise alignments of two biological sequences
Language:Java 1- Language:Java 1
Generate random sequence pairs to test pairwise aligners
Language:Rust 1ajombik / Project-2
If protein sequence NR2F6 is very similar between humans and mice, then mice that have SNP rs11856995 might show photic sneeze reflex (PSR) phenotype.
Language:Jupyter Notebook 0An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.
Language:R 0mvisani / MV_pairwise_alignment
This program allows to execute Pairwise alignment of proteins from a MS file.
Language:Python 0TiagoCoelhoFCUP / Bioinformatics
Projects developed under the Bioinformatics college chair during the 2020/2021 school year
Language:Python 0yiliangw / marker-code-tr
Python implementation for DNA trace reconstruction with marker code, MIT licensed
Language:Python 0- Language:Python
amirezzati / bioinformatics
Intro to Bioinformatics course contents
Language:PythonBCCDC-PHL / align-compare
Pipeline to make pairwise comparisons of matched fasta sequences.
Language:Pythonfadyehabamer / BioInformatics-SandBox
Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department
- Language:JavaScript
joyou159 / Pairwise-Sequence-Alignment
This repository provides implementations for basic sequence alignment techniques, focusing on two popular methods: Dot Plot and Needleman-Wunsch algorithm.
Language:Pythonpiz2a / pairwise-alignment
Pairwise alignment algorithm testing page
Language:TypeScriptvncsmnl / needleman-wunsch
🧬 This project implements the Needleman-Wunsch algorithm for global sequence alignment.
Language:Python
