overlap-graph

There are 0 repository under overlap-graph topic.

navjindervirdee / Genome-Sequencing
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
bubble-detection cycles debruijn-graph directed-graph error-correcting eulerian-circuit genome-assembly genome-sequencing graph graph-algorithms hamiltonian-cycles java kmer-composition overlap-graph phi-x174 reads tip-removal
Language:Java 10
zmmason / BINF
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
orf cyclic-pattern mass-spectrometry genome-analysis fasta fasta-sequences peptides cyclic-peptides dna motif directed-acyclic-graph de-bruijn-graphs overlap-graph protein-sequence k-mer z-score markov-chain
Language:Python 4
saishsali / cse549
Computational Biology Assignments
burrows-wheeler-transform bwt computational-biology de-bruijn-graphs dynamic-programming edit-distance eulerian-path fm-index overlap-graph parsimony rosalind
Language:Python 3
strumenti-formali-per-la-bioinformatica / Caos-virus-taxonomy-classification
[a.a. 23/24] A.Ture, G.Pagano
debrujin-graph fcgr overlap-graph taxonomy taxonomy-classification virus-classification
Language:Python 2
hishamcse / Simple_Genome_Assembler_PhiX174
The phi X 174 bacteriophage is a single-stranded DNA virus that infects Escherichia coli (E. Coli), and the first DNA-based genome to be sequenced. This work was completed by Fred Sanger and his team in 1977. This repository contains simple assembler, different components of it and various error correction techniques for assembling Phi X 174 bacteriophage
genome-assembler debruijn-graph overlap-graph eulerian-path hamiltonian-cycles
Language:Java 1