motif

There are 4 repositories under motif topic.

target / matrixprofile-ts
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
python time-series data-science matrix-profile python3 motif-discovery motif pip pip3 pypi-packages pypi timeseries-analysis timeseries-segmentation
Language:Python 738
chao1224 / ChatDrug
LLM for Drug Editing, ICLR 2024
chatgpt conversation drug drug-discovery editing molecule motif peptide protein retrieval secondary-structure small-molecule structure domain-feedback drug-editing chatgpt3 llm
Language:Python 151
EdMot
benedekrozemberczki / EdMot
An implementation of "EdMot: An Edge Enhancement Approach for Motif-aware Community Detection" (KDD 2019)
louvain community-detection graph-clustering networkx graph-partitioning gemsec deepwalk graph2vec deep-learning motif network-motif graph-motif graph-deco graph-algorithm igraph node2vec graph-embedding network-embedding gcn gnn
Language:Python 133
CostaLab / reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
bioinformatics genomics differential-peak-calling footprinting ngs dnase-seq chip-seq atac-seq motif motif-analysis
Language:Python 112
nkahmed / PGD
A Parallel Graphlet Decomposition Library for Large Graphs
graph graph-algorithms graphlet-decomposition-algorithms parallel subgraph-count motif-counts motif graphlet-frequency-distribution graphlet-counts pgd edges gfd graph-kernels graph-feature triangle-counting
Language:C++ 87
alx210 / emwm
Enhanced Motif Window Manager (MWM fork). Supports Xinerama, Xrandr, UTF-8/Xft, and relevant EWMH.
window-manager x11 motif
Language:C 83
rhaleblian / pirix
Emulation of SGI's IRIX Interactive Desktop on Raspberry Pi and platforms with Motif Window Manager
irix sgi magic desktop indigo raspberry pi motif mwm silicon-graphics cde raspberry-pi raspbian
Language:C 80
kraxel / fbida
ida (motif) and fbi (linux console) image viewers, also fbpdf & misc tools.
image-viewer motif linux console-application
Language:C 62
justinmeiners / classic-colors
Paint program for Unix. Inspired by MS Paint (Windows 95-98).
c graphics motif ms-paint paint paint-application unix x11
Language:C 48
patrickzib / motiflets
Motiflets
dataseries motif motif-discovery motifs pattern-recognition time-series time-series-analysis timeseries unsupervised-learning pattern pattern-discovery
Language:Jupyter Notebook 48
aravindsankar28 / Meta-GNN
Implementation of Meta-GNN in TensorFlow
graph motif tensorflow graph-convolutional-networks graph-neural-networks metagraph
Language:C++ 47
pinellolab / haystack_bio
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
epigenomics gene regulation tfs transcription-factor-binding rna-seq chip-seq fimo motifs epigenetics plasticity cell encode roadmap haystack-bio specific-regions haystack-pipeline gene-expression motif hotspot
Language:HTML 47
cdesktopenv / cde
Common Desktop Environment
cde motif x11 desktop-environment x-window-manager x-windows x11-wm x11-motif
Language:C 44
xcpc-emulator
ponceto / xcpc-emulator
Xcpc - Amstrad CPC emulator for Linux, BSD, Unix [this repository is a mirror]
emulator emulation retrocomputing retrogaming amstrad amstrad-cpc linux c motif athena intrinsic x11 mirror
Language:C 35
saketkc / pyseqlogo
Python package to plot sequence logos
sequence-logo motif motif-analysis tfs
Language:Python 29
benedekrozemberczki / OrbitalFeatures
A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)
motif node2vec deepwalk orbit graphlet centrality clustering-coefficient graph-enumeration sklearn research machine-learning network-science complex-networks feature-extraction data-science bioinformatics graph-classification node-embedding node-classification role2vec
Language:Python 26
Danko-Lab / rtfbs_db
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
transcription-factors transcription-factor-binding motif tfbs-discovery enrichment-analysis cis-bp r
Language:R 23
alx210 / xfile
Compact and straightforward file manager for Unix X11/Motif.
motif unix x11 file-manager
Language:C 22
alx210 / emwm-utils
Minimalist session manager and a /toolchest/ like application launcher for Unix/X11.
x11 session-management launcher-application motif unix
Language:C 21
steineggerlab / folddisco
Fast indexing and search of discontinuous motifs in protein structures
bioinformatics foldseek motif protein-structure
Language:Rust 19
fbkarsdorp / tmi
Flask Interface to Thompson's Motif Index
motif folktale thompson flask
Language:CSS 18
sarisabban / VaxDesign
A script that computationally designs a vaccine
protein-structure protein-data-bank scaffold vaccine scaffold-protein receptor motif ab-initio covid-19 sars-cov-2
Language:Python 18
ThomasAdam / moxfm
Motif version of the classic X File Manager (XFM)
motif xfm moxfm filemanager
Language:C 17
alx210 / ximaging
Lightweight, multithreaded image viewer/browser for Unix X11/Motif.
image-viewer file-management x11 motif unix
Language:C 16
xmgr-resurrection
mlund / xmgr-resurrection
Patched XMGR plotting program for 64-bit machines
xmgrace plotting motif wysiwyg c math graph abandonware
Language:C 13
TheKinaseLibrary / kinase-library
The Kinase Library: a Global Atlas of the Human Protein Kinome
the-kinase-library cell-signaling kinase kinase-activity-predictions kinase-enrichment-analysis kinome mea motif motif-enrichment-analysis pathway-enrichment-analysis phosphoproteomics phosphorylation ptm signaling-networks
Language:Jupyter Notebook 12
sib-swiss / pftools3
A suite of tools to build and search generalized profiles
profile protein-domains motif sequence-analysis
Language:C 11
akivawerner / XscHelp
Help ToolKit for OSF/Motif and the X-Window System
osf-motif motif x-windows cde
Language:C 9
baliga-lab / sequencelogo.js
Simple Javascript library for motif rendering
motif logo pssm sequence logos html5 cross-browser
Language:JavaScript 9
CrowdDynamicsLab / InfoMotif
Code for "Beyond Localized Graph Neural Networks: An Attributed Motif Regularization Framework" (ICDM 2020).
graph-neural-networks motif mutual-information pytorch self-supervised-learning
Language:C++ 8
digital-pet / Moontif
Motif on the moon (a.k.a Lua)
lua lua-library motif x11 gui toolkit xorg retrocomputing questionable-life-choice
Language:C 8
Motif-detection-VB6
Gagniuc / Motif-detection-VB6
This application searches inside a text sequence for words that resemble those inside a list of similar words.
motif motif-finding motifs motif-analysis dna-sequences pattern-recognition vb6-source
Language:Visual Basic 6.0 8
interkosmos / fortran-motif
Fortran 2008 interface bindings to Motif
fortran motif xm xt xlib x11 xmhtml fpm
Language:Fortran 7
MagnetarRocket / Mxterm
Archive of the hard to find Xterm variant modified to use the motif toolkit.
motif xterm
Language:C 7
TianYafu / RSG_Graph_Motif_Counter
Calculate the distribution of motifs in RSG Graph
graph motif motif-counts
Language:Python 7
USCbiostats / barry
barry: Your go-to motif accountant
ergm enumeration counting-statistics graph change-statistics exponential-family motif
Language:C++ 7