bionano

There are 1 repository under bionano topic.

• AmpliconSuite / AmpliconReconstructorOM

  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

  ngspythonoptical-mappingbionanoecdnacancer-genomicsgenome-sequencinggenome-assemblygenome-analysis
  Language:Python 15

• HuffordLab / Maize_NC358

  The repository for codes developed to generated the Maize NC358 assemblies and analyses.

  maizegenome-assemblyread-lengthread-depthpacbiobionanobenchmark
  Language:Jupyter Notebook 10

• institut-de-genomique / biscot

  Bionano SCaffolding Correction Tool

  bioinformaticsscaffoldingbionanoopticalmapsgenomics
  Language:Python 9

• ccneko / OMACASE

  an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities

  bionanogenomic-data-analysisgenomicsgenomics-visualizationoptical-mapping
  Language:Python 1

• daaaaande / bionanotator

  bionano annovar annotation

  bionanosv-annotationstructural-variationannovarbedtools
  Language:Perl 0

• laura-budurlean / structural_variant_OGM_WGS_pipeline

  A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.

  bionanooptical-mappingstructural-variationstructural-variation-callingsv-callingwgswhole-genome-sequencingoptical-genome-mapping
  0

• shada2 / Data

  Thesis results

  computionalbionano
  Language:Python 0

• WestGermanGenomeCenter / BNG_nanotatoR

  A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

  annotationbionanogenome-analysisopticalrsmapstructural-variation
  Language:R 0