qpcr
There are 1 repository under qpcr topic.
widdowquinn / find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
Language:Python 56- Language:R 46
biologger / speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
Language:Python 36- Language:R 33
- OmicSelector
kstawiski / OmicSelector
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Language:R 31 MahShaaban / pcr
Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data
Language:R 22jonas-fuchs / varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Language:Python 20- Language:R 20
NoahHenrikKleinschmidt / qpcr
A python package to analyse qPCR data for single-use or high-throughput application
Language:Python 18PCRuniversum / shinyMolBio
Molecular biology visualization tools for Shiny apps
Language:R 6ramiromagno / rdml
rdml: Mathematica package for Real-Time qPCR data
Language:Mathematica 6vidhurva / Random-Forest-Copy-Number-Variation
Bioinformatics CNV Detection with Random Forest Model
Language:Python 5NationalGenomicsCenter / eDNAssay
This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.
Language:R 4- Language:C++ 4
Qupid (Quantitative PCR Interface to Delta-Delta-Ct) - a versatile web-application for swift Delta-Delta-Ct analysis of qPCR data
Language:Python 3ppreshant / qPCR-analysis
Takes excel file output from qPCR (Quantstudio3, ABI) and sample labels. Optionally analyzes standard curves and plots CT, Tms and absolute copies
Language:HTML 3- Language:R 3
Biomarker data set by Vermeulen et al. (2009)
Language:R 3srinew / qPCR-Norm
An easy way to normalize CT values to Internal controls as well as housekeeping genes and download as heatmap.
Language:R 3asalimih / InterOpt
InterOpt: Improved gene expression quantification in qPCR experiments using weighted aggregation of reference genes
Language:R 2- Language:R 1
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dendrologicus / PRRC_qPCR_T18
Untangling the pea root rot complex leads to the identification of microbial markers for plant health
jdieramon / jdieramon.github.io
Jose V. Die
Language:HTML 1Repository for pan-spefic primers designed for tiled full genome sequencing or qPCR of viral pathogens. Pathogens include amongst others Hepatitis E virus, Hepatitis A virus, Poliovirus and SARS-COV-2. Primers were designed with varVAMP.
- Language:R 1
- Language:R 1
Xiang-yuZHAO / qPCR
便于qPCR数据快速处理的R shiny构建的软件 (Software built with R shiny for quick processing of qPCR data)
Language:R 1- Language:R 0
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Borrill-Lab / NAC5-1SenescenceDAPseq
Scripts for "Wheat NAC transcription factor NAC5-1 is a positive regulator of senescence" including DAP-seq analysis
Language:Rmirzaghaderi / rtpcr
rtpcr: a package for statistical analysis and graphical display of real-time PCR data in R
Language:R- Language:R
- Language:R
- Language:R
shubhamdutta26 / qPCR-data-analysis-R
Using R (Tidyverse) to analyse and plot RT-qPCR data
Language:HTML
