consensus-sequences
There are 0 repository under consensus-sequences topic.
- Language:C 107
pughlab / ConsensusCruncher
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
Language:Jupyter Notebook 21jonas-fuchs / varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Language:Python 20AndreaGuarracino / WFPOA
An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs
Language:C 8RIVM-bioinformatics / SARS2seq
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Language:Python 6rpianezza / GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
Language:Shell 6ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
Language:Python 5hivlab / sarscov2-variation
SARS-CoV-2 sequencing workflow
Language:Python 2echenim / AvalancheConsensusProtocol
Avalanche Consensus is a consensus protocol that is scalable, robust, and decentralized. It combines features of both classical and Nakamoto consensus mechanisms to achieve high throughput, fast finality, and energy efficiency
Language:Go 1sunnyosun / LINE-1-retrotransposon
Tools for analyzing LINE-1 elements
Language:Python 0BCCDC-PHL / consensus-align-utr-trim
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
Language:Nextflow- Language:Python
- Language:Python
