RNA Bioscience Initiative (RBI)

clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

valr

Genome Interval Arithmetic in R

djvdj

An R package to analyze single-cell V(D)J data

ggtrace

ggplot2 geoms to outline groups of data points

nihexporter

An R data package for NIH EXPORTER data

scraps

Single-cell RNA Processing Software

clustifyrdatahub

External single-cell mRNA sequencing data sets for use with clustifyr

raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

scbp

utility boilerplate single cell functions

molb-7950

MOLB 7950: Informatics and Statistics for Molecular Biology

rhumba

Snakemake pipelines for RNA sequencing data

spatialshiny

Browser for Spatial Transcriptomics, built on R Shiny

tRNA004

Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

bmsc-7810-pbda

BMSC 7810: Practical biological data analysis with R/RStudio

deepsort-rs

sort demultiplexed reads based on deeplexicon outputs

detectrms-rs

Fast detection of rna modifications sites

fuzzyfastq-rs

Rust implementation of fuzzy matching of sequences in FASTQ files

gene_model_plot

Python package designed to visualize gene models from GTF files and variants from VCF files.

pneuro-onc-browsers

Pediatric Neuro-oncology Cell Atlas

2a-peptide-search

HMM models of the 2A peptide and DB search results

ameloblast-scrnaseq

scRNA-seq analysis of ameloblasts

cellranger

10x Genomics Single Cell Analysis

lnsc-cell-browser

LNSC cell browser

molb-7950-data

Data repository for MOLB 7950

morrison-lnsc

Integrated analysis of CHIKV LNSC datasets

raerdata

collection of datasets to illustrate functionality in the raer pacakge

rbitemplate

RBI pkgdown template

reis-rbi-pilot-fat-body

remora

Methylation/modified base calling separated from basecalling.

tRNAseq-logistics

Nanopore tRNA sequencing logistics (Old chemistry)