A repository of genomics tools, compiled from C/C++ to WebAssembly so they can run in a web browser.
| Tool | Why biowasm? |
|---|---|
| sandbox.bio | Runs command-line tools in the browser to power interactive tutorials |
| 42basepairs | Runs samtools, bedtools, bcftools and other tools to preview genomic files |
| CZ ID (repo) | Runs htsfile and seqtk to identify data issues before file upload |
| Nanopore | Runs samtools to generate .bam files after basecalling in the browser |
| ViralWasm (repo) | Runs minimap2 and ViralConsensus for viral molecular epidemiology analysis |
| Datagrok (repo) | Runs kalign in the browser for multiple-sequence alignment analysis |
| bedqc (repo) | Runs bedtools in the browser to validate BED files |
| Ribbon (repo) | Runs samtools in the browser to parse, estimate coverage and subsample BAM files |
| fastq.bio (repo) | Runs fastp in the browser to evaluate sequencing data quality |
| Tool | Description | Link |
|---|---|---|
| biowasm | Recipes for compiling C/C++ genomics tools to WebAssembly | This repo |
| biowasm CDN | Free server hosting pre-compiled tools for use in your apps | biowasm.com/cdn |
| Aioli | Tool for running these modules in a browser, inside WebWorkers | biowasm/aioli |
- Logo by tinygraphs
See CONTRIBUTING.md.