There are 0 repository under entrez topic.
Brings bulk and pseudobulk transcriptomics to the tidyverse
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Materials used for introductory classes using Julia for statistics, biomedical queries and plotting
Python scripts for searching Pubmed using Biopython and working with eponymous terms
A VSM-dictionary that uses NCBI's E-utilities API to connect with the PubMed database
Python class project in collab with @heloint and @anivalle. Using Entrez, Seq.io, regex, pandas
This script iterates over an excel file with Genbank accession numbers. It creates individual fasta files with customized deflines for every valid accession number. It also creates a combined fasta file and .txt file with every valid accession number.
Modification of the Biopython Entrez module to be compatible with AWS Lambda.
This is a Kaggle competition sponsored by Memorial Sloan Kettering Cancer Center. This competition is the first step in personalized medicine to determine oncogenicity of a tumor. Algorithm using sparse words to predict gene mutations effect on protein function.
Sequencing data preprocessing
Query entrez databases using R, returns document summaries as data frame. Wrapper function around esearch and esummary etools.