cyverseuk

There are 0 repository under cyverseuk topic.

cyverseuk / Documentation
Wiki of CyVerseUK project. Tutorials and overview of technologies.
documentation cyverseuk agaveapi docker wiki tutorial hpc condor hpc-applications bioinformatics
2
cyverseuk / renseq
Renseq Pacbio pipeline
bioinformatics cyverseuk docker hpc-applications renseq-pacbio-pipeline
Language:Shell 2
cyverseuk / fastq-dump
cyverseuk docker fastq-dump
Language:Shell 1
cyverseuk / polymarker
Dockerized Agave app for Polymarker, a SNP assay development pipeline
bioinformatics cyverseuk docker hpc hpc-applications polymarker snp-assay-development wheat wheat-genome
Language:Shell 1
cyverseuk / templates
base templates for Dockerfile and wrappers
cyverseuk dockerfile docker workshop template wrapper agaveapi
Language:Dockerfile 1
cyversewarwick / cyversewarwick.github.io
A static webpage repository where the Warwick CyVerse UK team publish announcements such as workshops and tutorials.
cyverseuk
Language:CSS 1
cyverseuk / blast
blast docker image and cyverse integration
blast cyverse docker-image bioinformatics nucleotides dockerfile cyverseuk hpc hpc-applications
Language:Shell 0
cyverseuk / cyverse_website
bioinformatics cyverseuk django web-app website
Language:Python 0
cyverseuk / GWASSER
Dockerized Agave app for GWASSER, an R script for simple gwassing.
bioinformatics cyverseuk docker gwas hpc hpc-applications
Language:R 0
cyverseuk / mikado
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
mikado multiple-transcript-assemblies transcripts cyverseuk docker bioinformatics transcript hpc hpc-applications
Language:Shell 0
cyverseuk / mrbayes
MrBayes app w/docker & mpi
cyverseuk docker phylogenetics hpc hpc-applications
Language:Shell 0
cyverseuk / portcullis
portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis
cyverseuk docker portcullis bioinformatics bioinformatics-analysis hpc hpc-applications
Language:Shell 0
cyverseuk / RAxML
RAxML agave app and docker image
cyverseuk docker cipres phylogenetics hpc hpc-applications
Language:Shell 0
cyverseuk / tuxedo
Tuxedo suite for up to 4 conditions
tuxedo tuxedo-suite cyverseuk docker bioinformatics hpc hpc-applications
Language:Python 0
cyverseuk / beast
Agave Docker app for BEAST phylo package
cyverseuk docker beast phylogenetics cipres
Language:Shell
cyverseuk / beast2
Beast 2 agave & docker package
cyverseuk docker phylogenetics beast cipres hpc hpc-applications
Language:Shell
cyverseuk / bedtools
cyverseuk dockerfile docker-image bedtools bioinformatics hpc hpc-applications
Language:Shell
cyverseuk / Bowtie2
cyverseuk cyverse bowtie2 sequence-alignment bioinformatics dockerfile hpc hpc-applications
Language:Shell
cyverseuk / btrim
agaveapi bioinformatics cyverse cyverseuk dockerfile hpc hpc-applications trimming
Language:Shell
cyverseuk / concatenate_files
cyverseuk cyverse concatenation bioinformatics agaveapi concatenate-files hpc hpc-applications
Language:Shell
cyverseuk / Cufflinks
cyverseuk cyverse agaveapi bioinformatics dockerfile cufflinks rna-seq hpc hpc-applications
Language:Shell
cyverseuk / cut_columns
agaveapi bioinformatics columns cyverse cyverseuk hpc hpc-applications tabular-data
Language:Shell
cyverseuk / cutadapt
agaveapi bioinformatics cutadapt cyverseuk dockerfile hpc hpc-applications
Language:Shell
cyverseuk / kallisto
bioinformatics cyverseuk docker hpc hpc-applications kallisto
Language:Shell
cyverseuk / MUSCLE
cyverseuk agaveapi cyverse muscle bioinformatics dockerfile sequence-alignment hpc hpc-applications
Language:Shell
cyverseuk / NCBI_SRA_import
aspera bioinformatics cyverseuk docker-image dockerfile ncbi sra
Language:Shell
cyverseuk / ocsi
bioinformatics application cyverseuk cyverse agaveapi dockerfile
Language:Python
cyverseuk / ontologizer
cyverseuk cyverse agaveapi ontology gene-ontology dockerfile bioinformatics hpc hpc-applications
Language:Shell
cyverseuk / polymarker_wheat
polymarker image with wheat genome
polymarker docker cyverseuk bioinformatics wheat-genome
cyverseuk / Retrieve_BIP_Phenotypes
Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.
agave bip bip-api brassica-information-portal cyverse cyverseuk docker retrieve-brassica-phenotypes
Language:Ruby
cyverseuk / samtools
agaveapi bam-files bioinformatics cyverse cyverseuk dockerfile hpc hpc-applications samtools sorting
Language:Shell
cyverseuk / sickle
agaveapi bioinformatics cyverse cyverseuk dockerfile fastq hpc hpc-applications trimming
Language:Shell
cyverseuk / Tophat2
agaveapi bioinformatics bowtie2 cyverse cyverseuk dockerfile samtools tophat
Language:Shell
cyverseuk / Trimmomatic
docker image and Agave app for Trimmomatic software
cyverseuk cyverse agaveapi dockerfile bioinformatics trimming agave docker-image hpc hpc-applications
cyverseuk / uncompress_gunzip
agaveapi compression cyverse cyverseuk gunzip hpc hpc-applications