hisplan

docker-cellranger

Dockerized Cell Ranger

scing

SCING: Single-Cell pIpeliNe Garden (pronounced as "sing" /siŋ/)

sharp

A single-cell demultiplexing pipeline, the sharp (♯)

msk-hpc-utils

Utilities for MSK HPC

bcd-sandbox-2024S

빅데이터종합설계 샌드박스

bcd-test

빅데이터 종합설계

bigmac-kiosk-demo

Big Mac Kiosk Demo

cromsfer

Cromwell Output Transfer

cromwell-gwf-log

cromwell-gwf-setup

Setting up Cromwell + AWS GWF (Genomics Workflows)

docker-bcftools

Dockerized bcftools

docker-cellranger-atac

Dockerized Cell Ranger ATAC

docker-hello-handong

Hello Handong using Docker

docker-htslib

Dockerized HTSlib (bgzip, htsfile, and tabix utilities)

docker-samtools

Dockerized samtools

facamp-2024-summer

Football Analytics Camp Summer 2024

handong-bio-ai-workshop-2023-01

Handong Bio-AI Workshop Winter 2023

hello-world

hisplan.github.io

Personal Website

scing-notebooks

A collection of Jupyter notebooks which automate the creation of input files for SCING pipelines

seqc

Single-Cell Sequencing Quality Control and Processing Software

seqc-ada

SEQC Ada (AutomateD Analysis)

seqc-docker

Dockerized SEQC

seqc-packer

This package automates the creation of SEQC AMI (Amazon Machine Image).

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

tutorial-conda

wdl-ArchR

WDLized ArchR

wdl-cellranger-atac

WDLized Cell Ranger ATAC

wdl-cellranger-vdj

WDLized Cell Ranger V(D)J

wdl-mkref

WDLized mkref