University of Otago, Gardner BinfLab

TISIGNER-ReactJS

TISIGNER: Unleash the power of synthetic biology

deltaBS

Quantifying the significance of genetic variation using probabilistic profile-based methods.

invasive_salmonella

Data and code to accompany our paper on identifying patterns of gene degradation associated with invasiveness in Salmonella

RNA_Interactions_Benchmark

RNA-RNA interaction predictions tools benchmark scripts, wrappers and datafiles.

SoDoPE_paper_2020

Razor

Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.

speed-vs-accuracy-meta-analysis

scripts and datasets associated with a study of benchmarks of bioinformatic software

invasive_campylobacter

Data and code to accompany our work on invasive Campylobacter isolates

TIsigner

Translation Initiation coding region designer

AREBA

A RNA Encyclopaedia for Bacteria and Archaea

Avoidance

RNA avoidance scripts and data.

Compartmentalisation_Marsden2019

ncVarDB

Repo for the ncVAR database

PPI_Analysis_2022

An accurate, scalable and generalisable tool for predicting protein-protein interactions

TIsigner_paper_2019

Code related to TIsigner manuscript and webserver

Avoidance-v2

beth-thesis

EnTrI

genome-randomisation-survey

A survey of methods for randomising genome sequences

lars-thesis

Lars Barquist's Thesis

meta-analysis-eDNA-software

A meta-analysis of environmental DNA sequence analysis benchmarks

Non-codingDBS

A repository to keep files for Delta-bitscore non-coding variation project.

PCPBResults

Data and results for the paper "Flawed machine-learning confounds coding sequence annotation"

Razor_paper_2021

robustness-RNP

A series of comparisons of the mutational robustness of RNAs and proteins.

sRNA_evo

Beths sRNA evolution project, and other scripts

Streptococcus-pyogenes

Streptococcus pyogenes

thesis-bikash

Final version uwu 😊

twilight_zone

Manuscript, code, important data

uniqueome2