BioRetroSynth

RetroPathRL

Reinforcement Learning based bioretrosynthesis tool

rp2paths

RetroPath2.0 to pathways

active_learning_cell_free

Scripts to perform active learning as described in the referenced article.

RetroPath2-wrapper

Python wrapper for Retropath2.0 Knime workflow

amn_release

rptools

Suite of tools that work on rpSBML format

neo4jsbml

Bridge the gap between SBML data and Neo4j

straindesign

Library to perform metabolic engineering tasks

icfree-ml

Design of experiments (DoE) and machine learning packages for the iCFree project

RRParser

Reaction rules parser

rxn_rebuild

Rebuild full reaction from reaction rule

selenzy-wrapper

brs-utils

Utilities

DNA-BOT

rpbasicdesign

Convert rpSBML file to SBOL + CSV files ready to be used by DNA-Bot.

AMN_refactor

This is a simple refactorization of some use case of the AMN code

.github

bioconda-recipes

Conda recipes for the bioconda channel.

brendapy

BRENDA parser in python

brsynth.github.io

Website landing page

extractor_brendapy

galaxy

Data intensive science for everyone.

galaxytools

Galaxy wrappers of SynBioCAD tools suite

neo4jsbml-feedstock

A conda-smithy repository for neo4jsbml.

rpbasicdesign-feedstock

A conda-smithy repository for rpbasicdesign.

rr_cache

RetroRules Cache

rrparser-feedstock

A conda-smithy repository for rrparser.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

taxonid

Get taxon id from NCBI taxonomy database

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission