BioRetroSynth

RetroPathRL

Reinforcement Learning based bioretrosynthesis tool

rp2paths

RetroPath2.0 to pathways

active_learning_cell_free

Scripts to perform active learning as described in the referenced article.

amn_release

RetroPath2-wrapper

Python wrapper for Retropath2.0 Knime workflow

rptools

Suite of tools that work on rpSBML format

icfree-ml

Design of experiments (DoE) and machine learning packages for the iCFree project

straindesign

Library to perform metabolic engineering tasks

neo4jsbml

Bridge the gap between SBML data and Neo4j

RRParser

Reaction rules parser

rxn_rebuild

Rebuild full reaction from reaction rule

brs-utils

Utilities

DNA-BOT

AMN_refactor

This is a simple refactorization of some use case of the AMN code

extractor_brendapy

molecule-signature

Signature based molecule enumeration from morgan fingerprints

molecule-signature-paper

Code supporting the paper 'Getting Molecules from their Fingerprints: Generative Models vs. Deterministic Enumeration'

PINN

.github

bioconda-recipes

Conda recipes for the bioconda channel.

brendapy

BRENDA parser in python

brsynth.github.io

Website landing page

galaxy

Data intensive science for everyone.

galaxytools

Galaxy wrappers of SynBioCAD tools suite

icfree-feedstock

A conda-smithy repository for icfree.

neo4jsbml-feedstock

A conda-smithy repository for neo4jsbml.

rr_cache

RetroRules Cache

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

taxonid

Get taxon id from NCBI taxonomy database

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission