system-biology
There are 2 repositories under system-biology topic.
- Cell-DETR
ChristophReich1996 / Cell-DETR
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Language:Python 97 kourgeorge / project-origin
An Artificial Life simulator for Investigating Noogenesis
Language:Python 31- Language:Python 12
ComPath / compath-resources
This repository contains the different resources derived or generated using ComPath
Language:Jupyter Notebook 8- Language:Python 5
JinfengXiao / SigMat
SigMat: A Classification Scheme for Gene Signature Matching
Language:Jupyter Notebook 4- Language:R 2
iAMB-RWTH-Aachen / Opol-GSMM
Genome scale metabolic model for Ogataea polymorpha NCYC495.
Language:HTML 2aureliolfdez / pyengnet
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
Language:Cuda 1- Language:Python 1
- Language:HTML 1
- Language:Jupyter Notebook 1
SysBioChalmers / FALCONET
The FALCONET R package enables to build and visualise metabolic maps of GEM automatically with aid of cellDesigner 4.4 and R platform
Language:R 1- Language:MATLAB 0
bel-enrichment / results
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
Language:Jupyter Notebook 0- Language:Python 0
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
0glucksfall / atlas
Automatic rule-based modeling of metabolism, protein-protein interactions, and regulation of gene expression
Language:Jupyter Notebook 0jamesjan3 / minimalcellcycle
A rerun of the simulations of a Goldbeter paper
Language:Jupyter Notebook 0arriagajorge / Lung-Cancer-Multi-Omics-subtype
a multiomics approach on lung cancer (subtype approach)
Language:Rrezaaskary / probabilistic-modeling
A probabilistic programing library empowered with jax to speed up large simulations (still in progress!)
Language:Jupyter Notebook
