bioengineering

There are 9 repositories under bioengineering topic.

• modenaxe / awesome-biomechanics

  A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

  biomechanicsmotion-capturedatasetgaitmusculoskeletal-simulationsmusculoskeletal-modelsdynamicsawesomeawesome-listmotionsciencehuman-motionhuman-motion-analysismotion-trackingbioengineeringgait-analysiscomputer-simulation
  661
• poly

  bebop / poly

  A Go package for engineering organisms.

  synthetic-biologysynbiogenetic-engineeringmolecular-biologybioengineeringcomputational-biologybioinformaticsdnafastagenbankcodon-optimizersequence-hashingplasmidsprimer-designdna-barcodedna-barcodinggolden-gatemashalignmentgo
  Language:Go 648

• 20n / act

  Computational synthetic biology: Predicting DNA edits for bioengineering

  synthetic-biologydeep-learningbioengineeringdata-miningcomputational-synthetic-biologyfermentationacetaminophenbiochemistryreaction-operatorsenzyme-functionmetabolic-networkmetabolic-engineering
  Language:Java 80

• modenaxe / 3d-muscles

  Materials to reproduce the results of our paper about 3D muscle modelling.

  biomechanicshipjoint-modelsmusclemuscle-modelopensimscientific-publicationsscientific-researchscientific-papersbioengineeringgeometryscientific-visualization
  Language:MATLAB 28
• MuscleParamOptimizer

  modenaxe / MuscleParamOptimizer

  Scripts and models to optimize musculotendon parameters in musculoskeletal models.

  biomechanicsoptimization-techniquemusculotendon-parametersmatlabopensimmuscle-parametersmusclescientific-publicationsscientific-researchbioengineeringmusculoskeletal-models
  Language:MATLAB 20

• reubn / ecg

  Portable WiFi Connected IoT ECG Monitor 📈💕

  jsreactwebsocketsesp8266iotbiohackingecghealthmedicinebioengineeringbiomedical-engineeringcardiologyheartbpmheartratevxad8232wearablehealthcarequantified-self
  Language:JavaScript 15

• jvrana / Terrarium

  Computer-Aided Process Planner (CAPP) for Synthetic Biology Research

  aquariumautomationbioengineeringcadexperimentsprotocolsciencesynthetic-biology
  Language:Jupyter Notebook 11

• barricklab / ostir

  Software for predicting translation initiation rates in bacteria

  synthetic-biologybioengineeringrna-structure
  Language:Python 9

• meyer-lab / tHMM

  A general Python framework for using hidden Markov models on binary trees or cell lineage trees.

  inferencebioengineeringcell-biologyheterogeneitydrug-response
  Language:Python 9

• Bjarten / flc-based-filters

  flcbmflcebmflcwflcfourierseriesbmwflclinearcombinertremorhandessentialparkinsonsdiseasemotusbioengineeringdatasete-bmflcestimationestimator
  Language:Jupyter Notebook 6

• lorrandal / eeg-power_variability

  Combined study of two biological signals: EEG Power Variability and Middle Cerebral Artery Blood Flow Velocity

  eegsignal-processingfilteringbioengineeringar-model
  Language:MATLAB 5

• NydusOne / gcode-composer

  CARE! PROTOTYPE! The gcode composer is a tool to plan experiments with the nydus one open source bioprinter.

  3dprintingbioengineering
  Language:JavaScript 5

• ThecoderPinar / nanoDNA-nanoROBOT-simulation

  nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖

  algorithmsartificial-intelligencebioengineeringbioinformaticsbiomedical-engineeringcomputational-biologycomputational-modelingdata-analysisdnamachine-learningmolecular-biologynanotechnologyneural-networksopen-sourcepythonsciencesimulation
  Language:Python 4

• plasmid-designer / plasmid-designer

  Plasmid Designer and DNA Editor

  bioinformaticsdnageneticsplasmidcross-platformbioengineering
  Language:TypeScript 3

• Shaumik-Ashraf / BiosystemsProject

  A command-line interface and biochemical pathway finder based on KEGG

  keggbioengineeringbioinformaticsbiosystemsdepth-first-searchmit-licensed
  Language:Python 3
• vascular-networks

  AndrewAGuy / vascular-networks

  Procedural Plumbing for Bioengineers

  vascularvascular-networksvascularizationbioengineering
  Language:C# 2

• Blackfynn / blackfynn-matlab

  MATLAB toolbox/client for the Blackfynn platform

  bioengineeringdata-scienceescrow-eligiblematlabmetadataneuroscience
  Language:MATLAB 2

• J-E-J-S / aaRS-pipeline

  A Scalable Pipeline for Discovery of aaRS Mutants to Aid in Genetic Code Expansion.

  bioengineeringbioinformaticsbiologycomputational-biologynextflowpipelinepythonsynthetic-biology
  Language:Python 2
• ui

  medicamina / ui

  Medicamina user interface

  fluttermedicineopen-sourcebiologybioengineeringbioinformaticsdart
  Language:Dart 2

• paperchae / MIMIC

  bioengineeringdeep-learningmimic
  Language:Python 2

• ACRRL / Lab-Description

  Applied Control & Robotics Research Laboratory

  shirazuniversityrobotroboticcontrolsystemacrrliranfarstechnologypowermechatronicsmechatronic-systemselectronicbioengineeringrobotics-controlrobotics-programminglpvrobustlabview
  1

• imwiththou / PathwayNet

  PathwayNet is a project based on Python and Bioinformatics. It tries to build up mathematic modes on simulating pathways of amino acid synthesis in E. coli.

  computational-biologychemistrybioinformaticspathwaysbioengineering
  Language:Python 1

• LASER-UD / Pulsomertria-con-MAX30102

  En este proyecto se realizara la medición de el porcentaje de saturación de oxígeno de la hemoglobina con el uso del sensor MAX30102, el cual usa el protocolo I2C para su respectiva comunicación, la pila de comunicación se pondra en una libreria, la cual esta inspirada en https://github.com/sparkfun/SparkFun_MAX3010x_Sensor_Library. La lectura del sensor se enviara a un modulo Bluetooth para que se grafique la señal en a un celular con la aplicación Bluetooth Electronic. .

  psoc5lppsoci2cbluetoothhc-05applicationbioengineeringpulsometryserial-communication
  Language:C 1

• mattychin / 3D-cell-scaffold-generator

  Grasshopper algorithm for FRC-inspired scaffold generation.

  3d-printingadditive-manufacturingbioengineeringbioinspiredbiomaterialsscaffoldtissue-engineeringnature-inspired-engineering
  1

• medicamina / medicamina.github.io

  Documentation

  zolaadidoksgithub-pagesmedicinedocumentationbioengineeringbioinformaticsbiology
  Language:SCSS 1

• phuongho43 / beng125-trpOperon

  Modeling tryptophan operon dynamics based on Xiu 1997 paper

  jupyter-notebookpythontryptophannetworksdynamicshopf-bifurcationbioengineering
  Language:Jupyter Notebook 1

• Rice-University-BMES / Python-Workshops

  Introductory Python Workshops! Check out README for more info!

  pythonintroduction-to-programmingbioengineering
  Language:Python 1

• SamuelLozanoJuarez / CNN_and_Diabetic_Retinopathy

  Repository corresponding to the TFG 'Detection of the degree of diabetic retinopathy by means of convolutional networks' of the bachelor's degree in Bioengineering of the University of Burgos.

  bioengineeringcnn-pytorchdiabetic-retinopathydiagnosisstudent-project
  Language:Python 1

• santiagortiiz / Bioengineering-Firmware-29-Datalogger-I2C-Protocol

  University of Antioquia. Embedded Systems. Datalogger using I2C protocol with RTC MCP7940 & T[°C] Sensor LM75BD

  bioengineeringfirmwareembedded-systemsdataloggeri2c-protocolrtc-mcp7940lm75bd
  Language:C 1

• vedangnarain / polygraph-project

  This is a computational framework to analyze raw biological data generated from a polygraph test for the purpose of making psychophysiological inferences.

  psychophysiologypolygraphdeceptionbioengineering
  Language:Python 1

• duecce / ArduinoHRVAnalysis

  Development of an embedded system based on Arduino microcontroller to analyse Heart Rate Variability and compute its Fourier transform. The FFT results are sent through the serial port and then read by Matlab, which estimates the Local Power Spectral Density.

  arduinobioengineeringbiomedical-engineeringfft-analysisheart-rate-variability
  Language:C++ 0
• lmmk416.github.io

  Lmmk416 / lmmk416.github.io

  Lauren Mclaughlin-Kelly's Website

  bioengineeringbiomedicaldevicesengineeringmedicalmedicineorthopedicsurgery
  0

• santiagortiiz / Bioengineering-Firmware-28-SPI-Protocol-with-IMU-MPU9265

  University of Antioquia. Embedded Systems. SPI communication protocol with an IMU (Innertial Movement Unit)

  bioengineeringfirmwareembedded-systemsspi-protocolfifoeepromimu-mpu9265advanced-level
  Language:C 0

• Necas209 / Bioengineering-Workshops

  Source code for the Bioengineering workshops.

  bioengineeringcmatlab
  Language:C

• santiagortiiz / Bioengineering-Firmware-26-Sensing-System-Adjustable-Alarms

  University of Antioquia. Embedded Systems. Sensing system with adjustable alarms

  bioengineeringfirmwaresensorsembedded-systemsadvanced-levelpower-control
  Language:C

• santiagortiiz / Bioengineering-Firmware-27-Memory-Explorer

  University of Antioquia. Embedded Systems. Regions: Code, Flash, SRAM, Peripherals, external RAM, external device, system

  bioengineeringfirmwareembedded-systemsmemory-regionsmemory-exploreradvanced-level
  Language:C