georgeoshardo

SyMBac

Accurate segmentation of bacterial microscope images using synthetically generated image data.

ammonia-synthesis-simulation

Code I wrote which simulates an ammonia synthesis reactor by solving ODE system for flow, shell&tube heat transfer, pressure, and chemical kinetics

react2drug

Hackmed 2021 Entry: Finding possible synthesis pathway routes for drugs in a shortage due to COVID 19

rightmove_scraper

House hunting is no fun. Here's a class which will easily scrape housing information from Rightmove.

gillespy

Parallel implementation of the Gillespie algorithm in Python, compiled to machine code for ultra speed. Simulate single molecule chemical reactions at speed.

chem-eng-matlabs

Old hacked together scripts I wrote to speed up some chemical engineering calculations when I was doing chemical engineering

PyMMM

Python Mother Machine Manager

animplotlib

A thin wrapper around the matplotlib FuncAnimation class.

AOC_2021

Advent of Code 2021

DNA-bead-spring-model

Code for 2nd assignment of for 4G1 Mathematical Biology of the Cell

nd2_extractor

A simple tool to extract ND2 files to Zarr, PNG or TIFF

Paulsson_2005_simulation

Implementation of the model in Models of stochastic gene expression (doi:10.1016/j.plrev.2005.03.003)

ConvConsortium

CUSBSBiomaker2019

desktops-scripts

Scripts that I use to make my life easier

georgeoshardo

georgeoshardo.github.io

interactive_PC_microscope

An interactive phase contrast microscope model

MM_fluor

Segment fluorescence images of timelapse mother machine experiments quickly and with ease

napari-symbac

nikon_preprocessing

Preprocessing code for ND2 files generated by Nikon microscopes.

projection_diffraction

raster_geometry

Create/manipulate N-dim raster geometric shapes.

wp-latex-theme

A Wordpress theme resembling a latex document. Somewhat responsive and supports dark mode.

YASC

Yet Another Cell Simulator