biochemistry
There are 15 repositories under biochemistry topic.
- MolecularNodes
BradyAJohnston / MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Language:Python 887 - Language:Python 461
- Language:Go 242
weisscharlesj / SciCompforChemists
Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
Language:Jupyter Notebook 216copasi / COPASI
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
Language:C++ 92- Language:Python 89
- Language:Java 81
maxscheurer / pycontact
Analysis of non-covalent interactions in MD trajectories
Language:Python 51katrinleinweber / PhD-thesis
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
Language:Shell 43dwhswenson / contact_map
Contact map analysis for biomolecules; based on MDTraj
Language:Python 40jaleezyy / covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Language:Python 30- BRENDApyrser
Robaina / BRENDApyrser
A Python parser for the BRENDA database
Language:Python 23 resendislab / corda
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Language:Python 22NoahHenrikKleinschmidt / qpcr
A python package to analyse qPCR data for single-use or high-throughput application
Language:Python 21jiaqingxie / Theories-of-Graph-Neural-Networks
A List of Papers on Theoretical Foundations of Graph Neural Networks
IBM / AutoPeptideML
AutoML system for building trustworthy peptide bioactivity predictors
Language:Python 15m2d2-labs / awesome-ml-for-biochemistry
Community-curated resources for research at the intersection of AI and molecular sciences
ddoak / peppy
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
Language:C# 13HussainAther / biology
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
Language:Python 13shyambhakta / wetlabcalc
Wetlab Calculator
- Language:C 10
- protease_activity_analysis
avaamini / protease_activity_analysis
Python toolkit and package for analyzing enzyme activity data
Language:Jupyter Notebook 9 shiwentao00 / Graphsite-classifier
Ligand-binding site classification with deep graph neural networks.
Language:Python 9gitter-lab / pria_lifechem
Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library
Language:Jupyter Notebook 8PPDimitrakova20 / Sol-Invictus
A game where a roomba discovers amino-acids
Language:C 7AvocadosConstant / vax
š¦ Understanding the BioNTech SARS-CoV-2 mRNA vaccine genome.
Language:Jupyter Notebook 6Virtual screening on PriA-SSB with the AMS and Enamine REAL libraries
Language:Jupyter Notebook 6- Language:Jupyter Notebook 6
- Language:Python 5
Chlanda-Lab / cryoCLEM
Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
Language:Java 5hrshainik / biofidelicx-diary
biofidelicX diary is the ideal location to stay informed and up-to-date on the most recent research and discoveries in bio-science, whether you're a student, a scientist, or simply someone with a passion for learning about the natural world.
Language:JavaScript 5NilavoBoral / Therapeutics-Data-Commons
Single-instance Prediction of small-molecule drug.
Language:Jupyter Notebook 5subramv / helixvis
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
Language:Python 5- Language:Python 4
justinrporter / exposons-with-jug
Use the parallelization framework jug to build exposons!
Language:Python 4samberry19 / evcomplex-interaction-scoring
Code for using EVcomplex to generate "interaction scores" for individual sequences in a multiple sequence alignment.
Language:Jupyter Notebook 4
