biosynthetic-gene-clusters

There are 0 repository under biosynthetic-gene-clusters topic.

Merck / deepbgc
BGC Detection and Classification Using Deep Learning
deepbgc bidirectional-lstm pfam2vec biosynthetic-gene-clusters natural-products python deep-learning synthetic-biology
Language:Jupyter Notebook 117
medema-group / BiG-SCAPE
Similarity networks of biosynthetic gene clusters
bioinformatics biosynthetic-gene-clusters
Language:JavaScript 57
nf-core / funcscan
(Meta-)genome screening for functional and natural product gene sequences
nextflow workflow pipeline assembly contigs function screening metagenomics natural-products antimicrobial-resistance-genes antimicrobial-peptides biosynthetic-gene-clusters bioinformatics amp antibiotic-resistance arg bgc secondary-metabolites amr nf-core
Language:Nextflow 56
zellerlab / GECCO
GEne Cluster prediction with COnditional random fields.
natural-products biosynthetic-gene-clusters python bioinformatics genomics metagenomics secondary-metabolites
Language:Python 52
Kalan-Lab / zol
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
bioinformatics gene-clusters genomics detection evolution bgc phage biosynthetic-gene-clusters comparative-genomics metagenomics mobile-genetic-elements
Language:Python 34
Kalan-Lab / lsaBGC
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
bioinformatics biosynthetic-gene-clusters evolutionary-analysis genomics bgc
Language:Python 32
NBChub / bgcflow
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
pangenome-pipeline biosynthetic-gene-clusters genome-annotation genome-analysis
Language:Python 24
gvignolle / FunOrder
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
bioinformatics-tool bioinformatics bgc biosynthetic-gene-clusters biosynthesis evolutionary-computation bioinformatics-pipeline
5
jorgecnavarrom / BGClib
Methods and classes to support Biosynthetic Gene Cluster analysis
bgc bioinformatics secondary-metabolites biosynthetic-gene-clusters
Language:Python 5
paleobiotechnology / EMN001_Paleofuran
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
adna ancient-dna biosynthetic-gene-clusters dental-calculus genome-assembly metagenome-binning natural-products paleolithic chlorobium genome-reconstruction heterologous-gene-expression paleobiotechnology paleofuran
Language:Python 3
SinaBerkGolech / Metabolomics_Seminar_Topic_10
Case studies of reproducibility in bioinformatics: Metabolomics
bioinformatics biosynthetic-gene-clusters metabolomics reproducibility
Language:Jupyter Notebook 1
rajwanir / flongle_actinomycetes_paper
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
biosynthetic-gene-clusters flongle genomics natural-products oxford-nanopore streptomyces
Language:R 0
rajwanir / mibig_struc
An R shinny app for Substructure Search in MIBiG database.
biosynthesis biosynthetic-gene-clusters natural-products
Language:R 0
ALL-BGCs
systems-genomics-lab / ALL-BGCs
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
bioinformatics biosynthetic-gene-clusters metagenomics pipeline
Language:Shell 0
systems-genomics-lab / ALL-BGCs-runs
bioinformatics biosynthetic-gene-clusters pipeline metagenomics
Language:Jupyter Notebook 0
alienzj / bgctk
biosynthetic-gene-clusters toolkit
small-molecule biosynthetic-gene-clusters
Language:Python
BioGavin / BGC-relatedTools
💎 Resources of Biosynthetic Gene Clusters related databases and tools.
bioinformatics-tool biosynthetic-gene-clusters database