mri

There are 23 repositories under mri topic.

linhandev / dataset
医学影像数据集列表『An Index for Medical Imaging Datasets』
4d-lung ct dataset grand-challenge medical-imaging mri msd qin-lung-ct qin-prostate-repeatability tcia
2436
facebookresearch / fastMRI
A large-scale dataset of both raw MRI measurements and clinical MRI images.
fastmri mri deep-learning mri-reconstruction convolutional-neural-networks fastmri-dataset fastmri-challenge pytorch medical-imaging
Language:Python 1291
rordenlab / dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dicom nifti mri mri-images research neuroscience neuroimaging jpeg-image jpeg dicom-images dcm nii gz nitrc dcm2niix mricrogl bids-format nifti-format
Language:C++ 851
d-unsed / ruru
Native Ruby extensions written in Rust
native-ruby-extensions ruby rust mri ruru
Language:Rust 831
ruby / setup-ruby
An action to download a prebuilt Ruby and add it to the PATH in 5 seconds
mri jruby truffleruby actions prebuilt-ruby prebuilt-rubies ruby-action
Language:JavaScript 785
Shopify / yjit
Optimizing JIT compiler built inside CRuby
bytecode codegen compiler cruby jit jit-compiler mri ruby ruby-jit
641
freesurfer / freesurfer
Neuroimaging analysis and visualization suite
freesurfer lcn mri neuroimaging
Language:C++ 570
tom-lord / regexp-examples
Generate strings that match a given regular expression
ruby regexp mri data-generation random-string
Language:Ruby 522
brainchop
neuroneural / brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
deep-learning 3d-segmentation frontend-app javascript neuroimaging pyodide tensorflowjs three-js medical-imaging mri mri-segmentation
Language:JavaScript 335
js3611 / Deep-MRI-Reconstruction
Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo
deep-learning convolutional-neural-networks deep-neural-networks compressed-sensing mri image-reconstruction
Language:Python 317
jcreinhold / intensity-normalization
normalize the intensities of various MR image modalities
mri neuroimaging normalization intensity-normalization ravel fcm whitestripe standardization harmonization zscore
Language:Python 304
mikgroup / sigpy
Python package for signal processing, with emphasis on iterative methods
signal-processing compressed-sensing iterative-algorithms mri reconstruction machine-learning gpu optimization nufft rf-pulse-design
Language:Python 301
FirasGit / medicaldiffusion
Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis
ct diffusion-models machine-learning mri
Language:Jupyter Notebook 300
mrirecon / bart
BART: Toolbox for Computational Magnetic Resonance Imaging
computational-imaging mri iterative-methods compressed-sensing bart-toolbox deep-learning
Language:C 291
nipreps / mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
mri quality-control quality-reporter machine-learning neuroimaging
Language:Python 288
deepinv / deepinv
PyTorch library for solving imaging inverse problems using deep learning
computational-imaging deep-learning image-processing computed-tomography deblurring inverse-problems mri super-resolution deep-equilibrium-models plug-and-play unfolded diffusion-models
Language:Python 265
jibikbam / CNN-3D-images-Tensorflow
3D image classification using CNN (Convolutional Neural Network)
cnn 3d mri medical tensorflow neural-network dti nifti convolutional-neural-networks classification
Language:Python 258
himashi92 / VT-UNet
[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation
transformer 3d-medical-imaging-segmentation tumor-segmentation volumetric-transformer deep-learning pytorch-implementation pure-transformer pytorch segmentation mri vision-transformer vtunet semantic-segmentation brats-dataset
Language:Python 239
Mehrdad-Noori / Brain-Tumor-Segmentation
Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
brain-tumor-segmentation keras tensorflow2 deep-learning mri brats u-net multi-view attention-mechanism
Language:Python 206
mmuckley / torchkbnufft
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
mri deep-learning nufft pytorch reconstruction
Language:Python 203
spinalcordtoolbox
spinalcordtoolbox / spinalcordtoolbox
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
mri neuroimage python spinalcord
Language:Python 196
quqixun / BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
brain mri preprocessing fsl registration skull-stripping brain-segmentation ants enhancement bias-field-correction
Language:Python 187
Washington-University / workbench
Connectome Workbench
c-plus-plus neuroscience mri cifti nifti gifti
Language:C++ 181
StefanDenn3r / Unsupervised_Anomaly_Detection_Brain_MRI
Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
deep-learning unsupervised-learning anomaly-detection segmentation mri gan autoencoder variational-autoencoder
Language:Python 173
cwatson / brainGraph
Graph theory analysis of brain MRI data
graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks brain-imaging connectomics tractography fmri
Language:R 170
jrieke / cnn-interpretability
🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease
mri medical-imaging machine-learning deep-learning cnn convolutional-neural-networks interpretability visualization-methods interpretable-machine-learning alzheimers-disease alzheimer-disease-prediction
Language:Jupyter Notebook 162
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 161
imatge-upc / 3D-GAN-superresolution
3D super-resolution using Generative Adversarial Networks
gan super-resolution mri brain
Language:Python 158
afni / afni
Official AFNI source and documentation
anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization
Language:C 157
qMRLab / qMRLab
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
analysis data-simulation magnetic-resonance-imaging magnetization mapping mri qmri quantitative quantitative-mri relaxometry
Language:MATLAB 151
zaccharieramzi / fastmri-reproducible-benchmark
Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.
fastmri mri-reconstruction fastmri-dataset neural-network tensorflow convolutional-neural-networks mri fastmri-challenge unrolled-reconstruction-algorithm
Language:Jupyter Notebook 148
NYUMedML / CNN_design_for_AD
Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"
convolutional-neural-networks alzheimer-disease clinical-data medical-imaging mri deep-learning artificial-intelligence dementia mild-cognitive-impairment brain-mri
Language:Jupyter Notebook 136
bidscoin
Donders-Institute / bidscoin
BIDScoin converts your source-level neuroimaging data to BIDS
bids mri neuroimaging dicom pet imaging data-sharing multi-echo multi-echo-combine brain-imaging data-standards deface defacing parrec nibabel dcm2niix spec2nii mrs hpc bids-apps
Language:Python 129
nipreps / smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
mri structural-mri surface-reconstruction image-processing image-registration image-segmentation
Language:Python 128
ANTsR
ANTsX / ANTsR
R interface to the ANTs biomedical image processing library
brain decomposition mri r registration segmentation
Language:R 127
icon-lab / ResViT
Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis
attention deep-learning image-synthesis image-to-image-translation medical-imaging mri residual-learning transformers vision-transformer
Language:Python 126

mri

linhandev / dataset

facebookresearch / fastMRI

rordenlab / dcm2niix

d-unsed / ruru

ruby / setup-ruby

Shopify / yjit

freesurfer / freesurfer

tom-lord / regexp-examples

neuroneural / brainchop

js3611 / Deep-MRI-Reconstruction

jcreinhold / intensity-normalization

mikgroup / sigpy

FirasGit / medicaldiffusion

mrirecon / bart

nipreps / mriqc

deepinv / deepinv

jibikbam / CNN-3D-images-Tensorflow

himashi92 / VT-UNet

Mehrdad-Noori / Brain-Tumor-Segmentation

mmuckley / torchkbnufft

spinalcordtoolbox / spinalcordtoolbox

quqixun / BrainPrep

Washington-University / workbench

StefanDenn3r / Unsupervised_Anomaly_Detection_Brain_MRI

cwatson / brainGraph

jrieke / cnn-interpretability

josedolz / LiviaNET

imatge-upc / 3D-GAN-superresolution

afni / afni

qMRLab / qMRLab

zaccharieramzi / fastmri-reproducible-benchmark

NYUMedML / CNN_design_for_AD

Donders-Institute / bidscoin

nipreps / smriprep

ANTsX / ANTsR

icon-lab / ResViT