tumor-segmentation

There are 2 repositories under tumor-segmentation topic.

MrGiovanni / SyntheticTumors
[CVPR 2023] Label-Free Liver Tumor Segmentation
data-synthesis label-free tumor-segmentation segmentation unet
Language:Python 366
sdsubhajitdas / Brain-Tumor-Segmentation
Brain Tumor Segmentation done using U-Net Architecture.
deep-learning image-segmentation pytorch unet unet-image-segmentation unet-pytorch tumor-segmentation brain-tumor-segmentation
Language:Jupyter Notebook 287
himashi92 / VT-UNet
[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation
transformer 3d-medical-imaging-segmentation tumor-segmentation volumetric-transformer deep-learning pytorch-implementation pure-transformer pytorch segmentation mri vision-transformer vtunet semantic-segmentation brats-dataset
Language:Python 269
DiffTumor
MrGiovanni / DiffTumor
[CVPR 2024] Generalizable Tumor Synthesis - Realistic Synthetic Tumors in Liver, Pancreas, and Kidney
data-synthesis tumor-segmentation
Language:Python 195
MarvinLer / tcga_segmentation
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
multiple-instance-learning image-segmentation histopathology tumor-segmentation whole-slide-imaging wsi miccai tcga slide-image-segmentation tcga-data weakly-supervised-learning pathology computational-pathology data-efficient medical-imaging segmentation
Language:Python 141
LidiaGarrucho / MAMA-MIA
The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations
3d-segmentation benchmark-dataset breast-cancer breast-cancer-dataset cancer-imaging-research dce-mri deep-learning foundation-models medical-imaging mri-images mri-segmentation nnunet-v2 pretrained-models pretrained-weights public-dataset radiomics tumor-classification tumor-segmentation
Language:Jupyter Notebook 76
MrGiovanni / ContinualLearning
[MICCAI 2023] Continual Learning for Abdominal Multi-Organ and Tumor Segmentation
continual-learning organ-segmentation tumor-segmentation
Language:Python 70
junqiangchen / BraTS18-Challege
Multimodal Brain Tumor Segmentation Challenge 2018
tumor-segmentation mri mutilmodel vnet tensorflow
Language:Python 52
adityajn105 / brain-tumor-segmentation-unet
Implementation of U-Net from paper "U-Net: Convolutional Networks for Biomedical Image Segmentation" to segment tumor in given MRI images.
dice-loss image-segmentation keras mri-images tumor-segmentation unet unet-image-segmentation
Language:Jupyter Notebook 51
R-Super
MrGiovanni / R-Super
[MICCAI 2025 Best Paper Award Runner-up] Learning Segmentation from Radiology Reports
segmentation tumor-segmentation vision-language-model
Language:Python 49
Pixel2Cancer
MrGiovanni / Pixel2Cancer
[MICCAI 2024] Cellular Automata for Tumor Development - Realistic Synthetic Tumors in Liver, Pancreas, and Kidney
tumor-segmentation
Language:Jupyter Notebook 42
chaineypung / CCFBDCI-2021-Ultrasonic-Tumor-Segmentation-Rank1st
[CCF BDCI 2021] This is the source code of the 1st place solution for segmentation task (with Dice 90.32%) in 2021 CCF BDCI challenge.
deep-neural-networks hemangioma medical-imaging pytorch tumor-segmentation ultrasound-imaging
Language:Python 35
parhambt / MRI-brain-tumor-detection
tumor detection and segmentation with brain MRI with CNN and U-net algorithm
ai cnn computer-vision convolutional-neural-network ml neural-network u-net brain-tumor-detection brain-tumor-segmentation medical-image-processing tumor-detection tumor-segmentation brain-tumor-classification cancer-detection brain-tumor convolutional-neural-networks deep-neural-networks medical-image-analysis medical-image-computing medical-image-detection
Language:Jupyter Notebook 24
PathologyDataScience / MuTILs_Panoptic
Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs model and PanopTILs dataset. medRxiv 2022.01.08.22268814.
breast-cancer computational-pathology convolutional-neural-networks deep-learning digital-pathology explainable-ai tumor-infiltrating-lymphocytes tumor-segmentation
Language:Python 24
Alxaline / BraTS21
Solution of the RSNA/ASNR/MICCAI Brain Tumor Segmentation (BraTS) Challenge 2021
brain-tumor-segmentation brats-challenge brats2021 deep-learning medical-imaging pytorch tumor-segmentation unet brats
Language:Python 18
thavlik / machine-learning-portfolio
Assorted machine learning implementations for medical data.
deep-learning machine-learning vae fmri mri reinforcement-learning gan medical computed-tomography neuroscience eeg electroencephalography functional-mri computer-vision hemorrhage-detection medicine neurology radiology tumor-segmentation magnetic-resonance-imaging
Language:Python 18
AHMEDSANA / Binary-Class-Brain-Tumor-Segmentation-Using-UNET
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for our segmentation.
brain brain-tumor-classification brain-tumor-detection brain-tumor-segmentation brats-dataset brats18 brats2018 keras pandas segmentation tensorflow tumor-detection tumor-segmentation u-net u-net-keras python python3 nueral-networks deep-learning
Language:Jupyter Notebook 16
MungoMeng / Survival-AdaMSS
AdaMSS: Adaptive Multi-Modality Segmentation-to-Survival Learning for Survival Outcome Prediction
deep-learning survival-prediction tumor-segmentation
Language:Python 15
pramod-zillella / Pipelined-Tumor-Segmentation
A complete pipelined automatic process for skull stripping and tumor segmentation from Brain MRI using Thresholding.
thresholding-algorithm skull-stripping tumor-segmentation brain-mri image-analysis
Language:MATLAB 14
abeermohamed1 / Image-Processing
Image Processing and Computer Vision tasks using OpenCV Python: motion tracking, face detection, tumor segmentation
image-processing computer-vision opencv-python motion-tracking active-contour tumor-segmentation segmentation face-detection haar-cascade
Language:Python 13
ches-001 / Binary-Segmentation-Network-for-Tumor-Detection-in-MRIs
An approach to tumor detection and segmentation via encoder decoder artificial neural network architecture
artificial-neural-network binary-segmentation computer-vision-algorithm semantic-segmentation tumor-segmentation
Language:Jupyter Notebook 12
mahdizynali / Pytorch-UNet-Brain-Tumor-Detection
simple pytorch unet model for brain tumor detection on MRI tiff images
brain machine-learning neural-network pytorch tumor-detection tumor-segmentation unet unet-pytorch opencv4 python3
Language:Python 12
RichardObi / pre_post_synthesis
Official repository for "Pre- to Post-Contrast Breast MRI Synthesis for Enhanced Tumour Segmentation"
breast-cancer dce-mri generative-adversarial-network generative-ai image-synthesis mri nnunet pix2pixhd segmentation synthetic-data magnetic-resonance-imaging tumor-segmentation
Language:Python 12
GianlucaPorcelli / MRI_toumor_segmentation
The work presented explains how to segment the brain tumour area in absence of interaction with user basing his technique on a saliency map constructed from three different resonance techniques.
mri-images tumor tumor-segmentation gbm glioblastoma matlab saliency saliency-map salience pseudocolor adaptive threshold thresholding superpixels superpixel-segmentation
Language:MATLAB 7
AHMEDSANA / Four-class-Brain-tumor-segmentation
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.
python python3 brain-tumor-detection brain-tumor-segmentation braintumorsegmentation brats brats-dataset brats2018 deep-learning mri-images mri-segmentation tensorflow tumor-segmentation unet-image-segmentation unet-keras unet-segmentation
Language:Python 6
neuronets / ams
Automated meningioma segmentation
segmentation trained-models tensorflow neuroimaging mri tumor tumor-segmentation
Language:Python 6
aysekonus / BrainTumorSegmentation
"Derin Öğrenme Teknolojisi ile Beyin Tümörü Tespiti ve Segmentasyonu" konusu ele alınmış olup, tümörü kolaylıkla ve yüksek doğrulukta tespit edebilen bir bilgisayar destekli tümör tespit sistemi geliştirilmiştir.
brain brain-tumor brain-tumor-segmentation deep-learning deep-neural-networks derin-ogrenme mask-rcnn resnet resnet-101 t tumor tumor-detection tumor-segmentation
Language:Jupyter Notebook 5
mahdizynali / BraTS2020-Tensorflow-Brain-Tumor-Segmentation
implementation of Tensorflow Unet brain tumor segmentation and detection enhanced with attention model on nii datasets
attention-model brain detection machine-learning neural-network opencv segmentation tensorflow tensorflow2 tumor-detection tumor-segmentation unet unet-image-segmentation
Language:Python 5
Optimized-U-Net
miladsade96 / Optimized-U-Net
Optimized U-Net for Brain Tumor Segmentation
python python3 cv computer-vision deep-learning deep-neural-networks unet tumor-segmentation brats brain-tumor-segmentation
Language:Python 5
TheAlphaJas / Liver-Tumor-Seg-Implements
This repository contains codes of various state-of-the-art methods and research papers for Liver Tumor Segmentation
artificial-intelligence convolutional-neural-networks deep-learning liver-segmentation liver-tumor machine-learning medical-imaging tumor-segmentation
Language:Jupyter Notebook 5
harveyphm / brain-tumor-detection
Brain Tumor Detection Project with HaarCascade, Convolution Neural Network and OpenCV
br35h br35h-brain-tumor-detection-2020 haar-cascade haar-cascade-classifier image-processing opencv tumor-detection tumor-segmentation vgg16 vgg19 streamlit
Language:Jupyter Notebook 4
javaidiqbal11 / Automatic-Brain-Tumor-Segmentation-Python
A model build for the brain tumor segmentation using Brain MRI.
tumor-segmentation brain mri-images
Language:Python 4
lxaw / mamba-tumor-seg
Segmentation of cancerous tumors using Mamba. Code, resources, and paper provided. We manage to make a small (42k param) model that can segment pretty well.
image-segmentation mamba mamba-image segment segmentation tumor-segmentation u-net u-net-pytorch mamba-image-segmentation mamba-segment u-mamba mamba-state-space-models mamba-model segmentation-datasets segmentation-models segmentation-models-pytorch
Language:Jupyter Notebook 4
morteza89 / Brain-Tumor-Segmentation
In this project I'm going to segment Tumor in MRI brain Images with a UNET which is based on Keras. The dataset is available online on Kaggle, and the algorithm provided 99% accuracy with a validation loss of 0.11 in just 10 epochs.
machine-learning deep-learning unet-image-segmentation mri-segmentation tumor-segmentation unet cnn-keras lgg-mri-segmentation image-segmentation python segmentation kaggle medical-imaging
Language:Python 4
TheAlphaJas / HiFormer-LITS
Implementation of the LITS dataset on HiFormer architecture
deep-learning liver-segmentation machine-learning tumor-segmentation wacv2023 medical-image-segmentation transformer
Language:Python 4
mahdizynali / Decathlon-lung-tumor-segmentation
Decathlon lung tumor segmentation with custom segnet model
decathlon lung lung-tumor-segmentation pytorch segmentation semantic-segmentation tumor-segmentation
Language:Python 3

tumor-segmentation

MrGiovanni / SyntheticTumors

sdsubhajitdas / Brain-Tumor-Segmentation

himashi92 / VT-UNet

MrGiovanni / DiffTumor

MarvinLer / tcga_segmentation

LidiaGarrucho / MAMA-MIA

MrGiovanni / ContinualLearning

junqiangchen / BraTS18-Challege

adityajn105 / brain-tumor-segmentation-unet

MrGiovanni / R-Super

MrGiovanni / Pixel2Cancer

chaineypung / CCFBDCI-2021-Ultrasonic-Tumor-Segmentation-Rank1st

parhambt / MRI-brain-tumor-detection

PathologyDataScience / MuTILs_Panoptic

Alxaline / BraTS21

thavlik / machine-learning-portfolio

AHMEDSANA / Binary-Class-Brain-Tumor-Segmentation-Using-UNET

MungoMeng / Survival-AdaMSS

pramod-zillella / Pipelined-Tumor-Segmentation

abeermohamed1 / Image-Processing

ches-001 / Binary-Segmentation-Network-for-Tumor-Detection-in-MRIs

mahdizynali / Pytorch-UNet-Brain-Tumor-Detection

RichardObi / pre_post_synthesis

GianlucaPorcelli / MRI_toumor_segmentation

AHMEDSANA / Four-class-Brain-tumor-segmentation

neuronets / ams

aysekonus / BrainTumorSegmentation

mahdizynali / BraTS2020-Tensorflow-Brain-Tumor-Segmentation

miladsade96 / Optimized-U-Net

TheAlphaJas / Liver-Tumor-Seg-Implements

harveyphm / brain-tumor-detection

javaidiqbal11 / Automatic-Brain-Tumor-Segmentation-Python

lxaw / mamba-tumor-seg

morteza89 / Brain-Tumor-Segmentation

TheAlphaJas / HiFormer-LITS

mahdizynali / Decathlon-lung-tumor-segmentation