There are 11 repositories under mri-segmentation topic.
Brainchop: In-browser 3D MRI rendering and segmentation
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.
This repo contain my assignment notebooks for the Coursera AI for Medicine Specialization course. The link to the course: https://www.coursera.org/specializations/ai-for-medicine
PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)
A pytorch implementation of 3D UNet for 3D MRI Segmentation.
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.
Brain Segmentation on MRBrains18
Computational Anatomy Toolbox for SPM12 or SPM25
Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.
Neural network-based MRI preprocessing: Prep 🧠images in seconds 🔥
The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations
[AAAI'20] Segmenting Medical MRI via Recurrent Decoding Cell (Spotlight)
I have completed this specialization from Coursera by deeplearning.ai. I have uploaded the solutions of the assignments in this repo.
SASHIMI segmentation is a Matlab App for semi-automatic interactive segmentation of multi-slice images.
Automatic segment and generate masks for any 3D medical images using SAM model without prompt
Udacity AI for Healthcare Nanodegree Project: Measurement of Hippocampus Structure in MRI 3-D Images using Deep Learning Image Segmentation
In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and compared. This comparison reveals the tradeoff between achieving effective segmentation and segmentation accuracy. Using deep learning, specifically convolutional neural network methods, to build and train models
Segmentation of kidneys on MRI in Autosomal Dominant Polycystic Kidney
A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.
TensorFlow implementation of our paper: "Automated detection of aggressive and indolent prostate cancer on magnetic resonance imaging [Medical Physics 2021]".
Threshold-free cluster enhancement toolbox for Matlab
Official PyTorch Code for Hybrid Window Attention Based Transformer Architecture for Brain Tumor Segmentation: Solution for FeTS 2022 Task 2
Implementation of UNET++ for CAC Scoring using Tensorflow
Magnetic Resonance Images segmentation by Deep Neural Networks (Master Thesis)
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.
Official Implementation of ARACHNET: INTERPRETABLE SUB-ARACHNOID SPACE SEGMENTATION USING AN ADDITIVE CONVOLUTIONAL NEURAL NETWORK
This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.
automatic pipeline based on MRI segmentation and features extraction
Prostate cancer segmentation using multiparamteric MRI from Pi-CAI challenge dataset