mri-segmentation
There are 10 repositories under mri-segmentation topic.
- brainchop
neuroneural / brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
Language:JavaScript 363 MIC-DKFZ / MedNeXt
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
Language:Python 357shalabh147 / Brain-Tumor-Segmentation-and-Survival-Prediction-using-Deep-Neural-Networks
Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.
Language:Jupyter Notebook 165makama-md / AI-for-Medical-Diagnosis
This repo contain my assignment notebooks for the Coursera AI for Medicine Specialization course. The link to the course: https://www.coursera.org/specializations/ai-for-medicine
Language:Jupyter Notebook 71LightersWang / 3DUNet-BraTS-PyTorch
PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)
Language:Python 67aghdamamir / 3D-UNet
A pytorch implementation of 3D UNet for 3D MRI Segmentation.
Language:Python 51volBrain / AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
as791 / Multimodal-Brain-Tumor-Segmentation
Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.
Language:Jupyter Notebook 47ubamba98 / Brain-Segmentation
Brain Segmentation on MRBrains18
Language:Python 45ChristianGaser / cat12
Computational Anatomy Toolbox for SPM12 or SPM25
Language:MATLAB 33tayebiarasteh / federated_he
Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.
Language:Python 31- deepmriprep
wwu-mmll / deepmriprep
Neural network-based preprocessing of MRI data: Prepping brain images in seconds 🔥
Language:Python 23 - Language:Python 22
- Language:Python 22
shakex / recurrent-decoding-cell
[AAAI'20] Segmenting Medical MRI via Recurrent Decoding Cell (Spotlight)
Language:Python 21salmansust / AI-For-Medicine-Specialization
I have completed this specialization from Coursera by deeplearning.ai. I have uploaded the solutions of the assignments in this repo.
Language:Jupyter Notebook 18bartbols / SASHIMI
SASHIMI segmentation is a Matlab App for semi-automatic interactive segmentation of multi-slice images.
Language:MATLAB 16LidiaGarrucho / MAMA-MIA
The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations
Language:Jupyter Notebook 16AxDante / SAAMI
Automatic segment and generate masks for any 3D medical images using SAM model without prompt
Language:Python 14673958639 / Convolutional-Neural-Network-for-Brain-Lesion-Segmentation-in-MRI-Images
In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and compared. This comparison reveals the tradeoff between achieving effective segmentation and segmentation accuracy. Using deep learning, specifically convolutional neural network methods, to build and train models
Language:Jupyter Notebook 12- adpkd-segmentation-pytorch
aksg87 / adpkd-segmentation-pytorch
Segmentation of kidneys on MRI in Autosomal Dominant Polycystic Kidney
Language:Jupyter Notebook 12 ElliotY-ML / Hippocampus_Segmentation_MRI
Udacity AI for Healthcare Nanodegree Project: Measurement of Hippocampus Structure in MRI 3-D Images using Deep Learning Image Segmentation
Language:Jupyter Notebook 12- Language:MATLAB 12
- Paint4Brains
SABS-R3-projects / Paint4Brains
A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.
Language:Python 11 - Language:Python 9
himashi92 / vizviva_fets_2022
Official PyTorch Code for Hybrid Window Attention Based Transformer Architecture for Brain Tumor Segmentation: Solution for FeTS 2022 Task 2
Language:Python 9pimed / SPCNet
TensorFlow implementation of our paper: "Automated detection of aggressive and indolent prostate cancer on magnetic resonance imaging [Medical Physics 2021]".
Language:Python 9MIMIR-BIOMEDICAL / mobile-unetplusplus-cac-scoring
Implementation of UNET++ for CAC Scoring using Tensorflow
Language:Jupyter Notebook 8- tfce
Threshold-free cluster enhancement toolbox for Matlab
Language:MATLAB 7 antoinedelplace / MRI-Segmentation
Magnetic Resonance Images segmentation by Deep Neural Networks (Master Thesis)
Language:Python 6AHMEDSANA / Four-class-Brain-tumor-segmentation
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.
Language:Python 5innoisys / ArachNet
Official Implementation of ARACHNET: INTERPRETABLE SUB-ARACHNOID SPACE SEGMENTATION USING AN ADDITIVE CONVOLUTIONAL NEURAL NETWORK
Language:Python 5TUDelftHao / 4DLongitudinal-MRI-Segmentation-Network
This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.
Language:Python 5giuseppefilitto / img-segm
automatic pipeline based on MRI segmentation and features extraction
Language:Jupyter Notebook 4morteza89 / Brain-Tumor-Segmentation
In this project I'm going to segment Tumor in MRI brain Images with a UNET which is based on Keras. The dataset is available online on Kaggle, and the algorithm provided 99% accuracy with a validation loss of 0.11 in just 10 epochs.
Language:Python 3
