mri-segmentation

There are 11 repositories under mri-segmentation topic.

brainchop
neuroneural / brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
deep-learning 3d-segmentation frontend-app javascript neuroimaging pyodide tensorflowjs three-js medical-imaging mri mri-segmentation
Language:JavaScript 407
MIC-DKFZ / MedNeXt
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
convnext ct-segmentation medical-ai medical-image-analysis medical-image-segmentation medical-imaging mednext mri-segmentation transformers unet-image-segmentation
Language:Python 381
shalabh147 / Brain-Tumor-Segmentation-and-Survival-Prediction-using-Deep-Neural-Networks
Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.
brain-tumor-segmentation survival-prediction deep-neural-networks unet-architecture segmentation keras-tensorflow brats-dataset medical-imaging aiformedicine vnet3d unet-3d survival-models glioma mri-segmentation deep-learning cnn-segmentation dice-scores dice-coefficient dice-loss
Language:Jupyter Notebook 169
makama-md / AI-for-Medical-Diagnosis
This repo contain my assignment notebooks for the Coursera AI for Medicine Specialization course. The link to the course: https://www.coursera.org/specializations/ai-for-medicine
ai-for-medicine coursera deeplearning-ai scikit-learn python mri-segmentation medical-imaging keras tensorflow
Language:Jupyter Notebook 74
LightersWang / 3DUNet-BraTS-PyTorch
PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)
brain-tumor-segmentation brain-tumors brats-challenge brats-dataset brats2021 mri-segmentation pytorch segmentation semantic-segmentation unet
Language:Python 68
aghdamamir / 3D-UNet
A pytorch implementation of 3D UNet for 3D MRI Segmentation.
segmentation 3dunet medical-image-segmentation mri-segmentation unet
Language:Python 58
volBrain / AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
neuroscience neuroimaging brain-imaging medical-imaging deep-learning neuroanatomy brain-segmentation mri mri-segmentation nifti neurodegenerative-diseases dementia alzheimer parkinson schizophrenia autism docker
58
as791 / Multimodal-Brain-Tumor-Segmentation
Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.
semantic-segmentation brats-challenge unet-image-segmentation python3 jupyter-notebook colaboratory mri-segmentation nifti-gz nifti-format brats brain-tumor-segmentation
Language:Jupyter Notebook 48
ubamba98 / Brain-Segmentation
Brain Segmentation on MRBrains18
brain unet-image-segmentation keras mri-segmentation segmentation brain-imaging
Language:Python 45
ChristianGaser / cat12
Computational Anatomy Toolbox for SPM12 or SPM25
cortical-surfaces cortical-thickness gyrification mri-brain mri-brain-segmentation mri-segmentation neuroimaging statistical-analysis surface-reconstruction visualisation voxel-based-morphometry computational-neuroscience matlab surface-registration
Language:MATLAB 34
tayebiarasteh / federated_he
Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.
federated-learning homomorphic-encryption differential-privacy segmentation medical-image-analysis medical-imaging deep-learning federated-learning-framework image-classification image-segmentation mri-brain mri-images mri-segmentation pysyft pytorch
Language:Python 33
deepmriprep
wwu-mmll / deepmriprep
Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥
brain-extraction deep-learning mri-brain mri-segmentation neuroimaging python segmentation skull-stripping voxel-based-morphometry
Language:Python 28
LidiaGarrucho / MAMA-MIA
The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations
3d-segmentation benchmark-dataset breast-cancer breast-cancer-dataset cancer-imaging-research dce-mri deep-learning foundation-models medical-imaging mri-images mri-segmentation nnunet-v2 pretrained-models pretrained-weights public-dataset radiomics tumor-classification tumor-segmentation
Language:Jupyter Notebook 25
Deep-MI / FatSegNet
Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
deep-learning image-segmentation mri-segmentation abdominal-adipose-tissue dixon-mri medical-image-processing
Language:Python 22
Macatools / macapype
PNH segmentation pipelines based on nipype
python nipype mri-segmentation primate afni ants spm12 fsl mri mri-analysis brain-extraction brain-segmentation mesh
Language:Python 22
shakex / recurrent-decoding-cell
[AAAI'20] Segmenting Medical MRI via Recurrent Decoding Cell (Spotlight)
aaai2020 mri-segmentation semantic-segmentation encoder-decoder medical-image-segmentation
Language:Python 21
salmansust / AI-For-Medicine-Specialization
I have completed this specialization from Coursera by deeplearning.ai. I have uploaded the solutions of the assignments in this repo.
coursera coursera-specialization coursera-machine-learning coursera-assignment deeplearning-ai artificialintelligence deeplearning healthcare-imaging mri-segmentation brain-imaging ai-for-medicine-coursera ai-for-medical-diagnosis ai-for-medical-prognosis ai ai-for-medical-treatment ai-for-medicine
Language:Jupyter Notebook 18
bartbols / SASHIMI
SASHIMI segmentation is a Matlab App for semi-automatic interactive segmentation of multi-slice images.
image-processing matlab-app-designer matlab-gui segmentation mri-segmentation image-registration
Language:MATLAB 16
AxDante / SAAMI
Automatic segment and generate masks for any 3D medical images using SAM model without prompt
3d-segmentation medical-image-segmentation medical-imaging segment-anything segment-anything-model segmentation-models medical sam saami mri mri-segmentation
Language:Python 14
ElliotY-ML / Hippocampus_Segmentation_MRI
Udacity AI for Healthcare Nanodegree Project: Measurement of Hippocampus Structure in MRI 3-D Images using Deep Learning Image Segmentation
cnn-pytorch unet-pytorch segmentation dicom nifti mri-segmentation
Language:Jupyter Notebook 14
673958639 / Convolutional-Neural-Network-for-Brain-Lesion-Segmentation-in-MRI-Images
In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and compared. This comparison reveals the tradeoff between achieving effective segmentation and segmentation accuracy. Using deep learning, specifically convolutional neural network methods, to build and train models
convolutional-neural-networks deep-learning deeplabv3 fcn medical-imaging mri-segmentation pytorch segnet unet
Language:Jupyter Notebook 12
adpkd-segmentation-pytorch
aksg87 / adpkd-segmentation-pytorch
Segmentation of kidneys on MRI in Autosomal Dominant Polycystic Kidney
segmentation efficientnet unet unet-image-segmentation pytorch medical-imaging mri-images mri-segmentation configuration-management
Language:Jupyter Notebook 12
jingyunc / wmhs
Automated subdivision of white matter hyperintensities
matlab-toolbox mri-segmentation white-matter-hyperintensities white-matter-lesion
Language:MATLAB 12
Paint4Brains
SABS-R3-projects / Paint4Brains
A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.
mri mri-images mri-segmentation mri-applications mri-brain deep-neural-networks deeplearning brain brain-imaging segmentation segment gui convolutional-neural-networks u-net biomedical biomedical-image-processing paint paint-for-brains paint4brains mri-brain-segmentation
Language:Python 12
pimed / SPCNet
TensorFlow implementation of our paper: "Automated detection of aggressive and indolent prostate cancer on magnetic resonance imaging [Medical Physics 2021]".
prostate-cancer-detection prostate-segmentation prostate prostate-cancer mri-segmentation lesion-detection spcnet prostate-cancer-biopsies
Language:Python 10
AKuzina / DWP
Pytorch implementation of the DWP with application to MRI segmentation
bayesian-inference deep-learning mri-segmentation semantic-segmentation transfer-learning
Language:Python 9
tfce
ChristianGaser / tfce
Threshold-free cluster enhancement toolbox for Matlab
mri-brain mri-segmentation neuroimaging neuroimaging-analysis tfce voxel cortical-surfaces cluster-enhancement statistical-analysis
Language:MATLAB 9
himashi92 / vizviva_fets_2022
Official PyTorch Code for Hybrid Window Attention Based Transformer Architecture for Brain Tumor Segmentation: Solution for FeTS 2022 Task 2
brain brain-tumor-segmentation cswin deep-learning mri-segmentation pure-transformer python3 swin vision-transformer
Language:Python 9
MIMIR-BIOMEDICAL / mobile-unetplusplus-cac-scoring
Implementation of UNET++ for CAC Scoring using Tensorflow
cac-scoring mri-segmentation tensorflow unet unet-keras unetplusplus
Language:Jupyter Notebook 8
antoinedelplace / MRI-Segmentation
Magnetic Resonance Images segmentation by Deep Neural Networks (Master Thesis)
segmentation mri-segmentation unet tensorflow mri
Language:Python 6
volBrain / DeeplesionBrain
medical-imaging neuroscience neuroimaging neuroanatomy brain-imaging deep-learning mri mri-segmentation multiple-sclerosis mri-brain nifti
6
AHMEDSANA / Four-class-Brain-tumor-segmentation
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.
python python3 brain-tumor-detection brain-tumor-segmentation braintumorsegmentation brats brats-dataset brats2018 deep-learning mri-images mri-segmentation tensorflow tumor-segmentation unet-image-segmentation unet-keras unet-segmentation
Language:Python 5
innoisys / ArachNet
Official Implementation of ARACHNET: INTERPRETABLE SUB-ARACHNOID SPACE SEGMENTATION USING AN ADDITIVE CONVOLUTIONAL NEURAL NETWORK
additive-models computer-vision convolutional-neural-networks interpretability interpretable-deep-learning mri-segmentation
Language:Python 5
TUDelftHao / 4DLongitudinal-MRI-Segmentation-Network
This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.
u-net mri-segmentation mri-brain 4d-segmentation lstm-model
Language:Python 5
giuseppefilitto / img-segm
automatic pipeline based on MRI segmentation and features extraction
machine-learning mri-segmentation features-extraction keras-tensorflow medical-imaging deep-learning segmentation
Language:Jupyter Notebook 4
tayebiarasteh / picai-segmentation
Prostate cancer segmentation using multiparamteric MRI from Pi-CAI challenge dataset
mri-segmentation prostate-cancer pytorch
Language:Python 3

mri-segmentation

neuroneural / brainchop

MIC-DKFZ / MedNeXt

shalabh147 / Brain-Tumor-Segmentation-and-Survival-Prediction-using-Deep-Neural-Networks

makama-md / AI-for-Medical-Diagnosis

LightersWang / 3DUNet-BraTS-PyTorch

aghdamamir / 3D-UNet

volBrain / AssemblyNet

as791 / Multimodal-Brain-Tumor-Segmentation

ubamba98 / Brain-Segmentation

ChristianGaser / cat12

tayebiarasteh / federated_he

wwu-mmll / deepmriprep

LidiaGarrucho / MAMA-MIA

Deep-MI / FatSegNet

Macatools / macapype

shakex / recurrent-decoding-cell

salmansust / AI-For-Medicine-Specialization

bartbols / SASHIMI

AxDante / SAAMI

ElliotY-ML / Hippocampus_Segmentation_MRI

673958639 / Convolutional-Neural-Network-for-Brain-Lesion-Segmentation-in-MRI-Images

aksg87 / adpkd-segmentation-pytorch

jingyunc / wmhs

SABS-R3-projects / Paint4Brains

pimed / SPCNet

AKuzina / DWP

ChristianGaser / tfce

himashi92 / vizviva_fets_2022

MIMIR-BIOMEDICAL / mobile-unetplusplus-cac-scoring

antoinedelplace / MRI-Segmentation

volBrain / DeeplesionBrain

AHMEDSANA / Four-class-Brain-tumor-segmentation

innoisys / ArachNet

TUDelftHao / 4DLongitudinal-MRI-Segmentation-Network

giuseppefilitto / img-segm

tayebiarasteh / picai-segmentation