brain-connectivity

There are 6 repositories under brain-connectivity topic.

nilearn / nilearn
Machine learning for NeuroImaging in Python
python machine-learning fmri neuroimaging mvpa decoding brain-connectivity brain-imaging brain-mri
Language:Python 1111
urish / muse-js
Muse 2016 EEG Headset JavaScript Library (using Web Bluetooth)
web-bluetooth eeg eeg-headset eeg-headband eeg-data bci brain-computer-interface brain-connectivity typescript-library
Language:TypeScript 274
basiralab / GNNs-in-Network-Neuroscience
A review of papers proposing novel GNN methods with application to brain connectivity published in 2017-2020.
graph-neural-network graph-prediction biomarker network-neuroscience brain-connectivity brain-disorders geometric-deep-learning gans predictive-intelligence graph-integration graph-fusion graph-synthesis graph-superresolution graph-timeseries gnn gnns brain-gnn
196
cwatson / brainGraph
Graph theory analysis of brain MRI data
graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks brain-imaging connectomics tractography fmri
Language:R 163
Eden-Kramer-Lab / spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
neuroscience frequency-domain electrophysiology brain-connectivity multitaper coherence connectivity-measures python canonical-coherence phase-lag-index spectral-granger-causality global-coherence spectrogram
Language:Python 119
dPys / PyNets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
workflow nipype dipy nilearn tractography fmri dmri ensemble-sampling networks brain-connectivity gridsearch networkx optimization ensemble-learning multiverse fuzzy-logic decision-trees graph-neural-networks
Language:Python 117
basiralab / RegGNN
Regression Graph Neural Network (regGNN) for cognitive score prediction.
gnn regression brain-connectivity network-neuroscience graph-neural-networks sample-selection cognitive-score matrix-parallel-transport symmetric-positive-definite riemannian-manifold geodesic-transport
Language:Python 60
basiralab / BrainNet-ML-ToolBox
Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.
machine-learning-algorithms machine-learning classification brain-connectivity brain-networks dimensionality-reduction feature-selection feature-extraction data-processing brain-disorders
Language:Python 38
ActflowToolbox
ColeLab / ActflowToolbox
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
activity-flow neuroimaging fmri brainweb brain-connectivity machine-learning neural-networks simulations
Language:Python 34
SIMEXP / niak
GNU Octave library for connectivity analysis in large fMRI datasets
fmri brain-connectivity octave neuroimaging pipelines data-mining
Language:MATLAB 26
basiralab / DGN
How to fuse a population of graphs into a single one using graph neural networks?
brain-networks cbt brain-connectivity geometric-deep-learning network-integration network-fusion network-analysis machine-learning-algorithms brain-gnn graph-integration graph-fusion graph-neural-networks gnn atlas-learning
Language:Python 22
patrk / pyPTE
Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy
neuroscience eeg eeg-analysis brain brain-connectivity transfer-entropy phase-transfer-entropy
Language:Python 22
basiralab / MultiGraphGAN
MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.
brain-graphs graph-generation source-graph target-graph gan generative-adversarial-network geometric-deep-learning brain-connectivity morphological-brain-networks multimodal-deep-learning predictive-learning predictive-intelligence multi-view-learning
Language:Python 21
brain-network / bnt
Brain Network Toolbox
network-analysis brain-connectivity multilayer-network graph-algorithms
Language:MATLAB 18
basiralab / GSR-Net
Graph SuperResolution Network using geometric deep learning.
gsr-net resolution-connectomes graph-superresolution brain-graphs geometric-deep-learning u-net network-neuroscience predictive-intelligence predictive-learning generative-models data-generation brain-connectivity deep-learning-architectures
Language:Python 15
EsiSeraj / ERP_Connectivity_EMG_Analysis
Essential Motor Cortex Signal Processing MATLAB Toolbox which implements various methods for three major aspects of investigating human motor cortex from Neuroscience view point: (1) ERP estimation and quantification, (2) Cortical Functional Connectivity analysis and (3) EMG quantification
event-related-potentials erp event-related-synchronization ers event-related-desynchronization erd erp-time-dynamics time-frequency-analysis cortical-functional-connectivity functional-connectivity brain-computer-interface brain-connectivity electroencephalogram eeg electromyogram emg emg-quantification matlab-functions free-toolbox user-manual
Language:MATLAB 15
basiralab / HCAE
HCAE (HyperConnectome AutoEncoder) for brain state identification.
hyperconnectome hyperconnectivity hyperconnectome-autoencoder graph-embedding hypergraph-embedding multiview-graph brain-connectivity morphological-brain-networks distribution-alignment hypergraph-convolutional-layers hypergraph-autoencoding
Language:Python 13
BRAPH
braph-software / BRAPH
Brain Analysis using Graph Theory
neuroscience neuroscience-methods brain-connectivity brain-connectome
Language:MATLAB 12
basiralab / MGN-Net
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
graph-normalizer biological-networks multiview-networks multigraph graph-integration data-fusion data-integration brain-networks brain-connectivity connectomes network-neuroscience graph-neural-networks
Language:Python 9
basiralab / MultigraphGNet
Predicting multigraph brain population from a single graph
graph-augmentation brain-connectivity connectomics deep-learning geometric-deep-learning gnn graph-neural-networks medical-dataset multigraph-generation network-neuroscience predictive-learning brain-networks generative-learning brain-mapping network-analysis
Language:Python 8
NIRALUser / CIVILITY
Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.
tractography connectivity-matrix seed brain-connectivity brain-connectome fsl civility
Language:JavaScript 8
smlacava / Athena
ATHENA (Automatic Toolbox for Handling Experimental Neural Analysis)
eeg brain brain-connectivity brain-imaging eeg-signals eeg-analysis eeg-data eeg-signals-processing neuroimaging neuroscience
Language:MATLAB 8
basiralab / 4D-FedGNN-Plus
Federating temporally-varying graph timeseries
gnn graph-neural-networks temporal-data timeseries-forecasting 4d-gnn brain-connectivity brain-networks federated-learning generative generative-learning graph-synthesis missing-data network-neuroscience
Language:Jupyter Notebook 7
basiralab / ABMT
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes brain-network geometric-deep-learning graph-generation graph-embedding multiplex data-generation predictive-learning predictive-intelligence gender-classification brain-connectivity brain-networks connectome gan generative-adversarial-network
Language:Python 7
basiralab / MICNet
Multigraph fusion and classification network using graph neural network
multigraph-integration multigraph-classification graph-neural-networks gcn diff-pool neural-networks deep-learning-framework brain-connectivity network-neuroscience network-fusion network-integration multiview-data multi-view-networks ai4medicine data-heterogeneity gender-differences brain-map mri-images
Language:Python 7
tiaco
NaserElziadna / tiaco
🏆🥇 Tiaco : Online Multiplayer is one of the best puzzle games in the market. 🥇🏆
brain-connectivity cross-platform firebase firebase-firestore flutter flutter-app flutter-apps game multiplayer online-game puzzle-game tic-tac-toe
Language:Dart 7
basiralab / CGTS-GAN
Topology-guided cyclic graph generation using GCNs.
graph-neural-networks cyclegan graph-generation gan brain-connectome brain-connectivity topology-graph gcn graph-convolutional-networks
Language:Python 6
basiralab / RG-Select
Quantifying the Reproducibility of Graph Neural Networks using Multigraph Brain Data
reproducible-research reproducibility reproducible-science graph-neural-networks multigraph classification deep-learning brain-connectivity gcn graph-convolutional-networks sag graph-attention-networks diffpool network-neuroscience
Language:Python 6
HealthX-Lab / SONIA
Customizable system for displaying and inspecting brain structures, connections, and subsystems in VR
medical-imaging unity unity3d ux vr brain-connectivity education human-computer-interaction neuroanatomy virtual-reality
Language:C# 6
softmatterlab / Braph-2.0-Python
Brain Analysis using Graph Theory
neurosicence brain-connectivity
Language:Python 6
basiralab / netNorm-PY
netNorm (network normalization) framework for multi-view network integration (or fusion), recoded up in Python by Ahmed Nebli.
network-fusion network-normalization network-integration sample-selection brain-connectivity network-neuroscience biomarker-discovery multi-view-networks multigraph-integration multigraph-fusion connectome-mapping brain-networks high-order-connectivity brain-disorders
Language:Python 5
basiralab / predUncertaintywithDomainShift
How to predict uncertainty of regression GNN models under target domain shifts?
domain-shift gnn graph-neural-network regression-models uncertainty-quantification brain-connectivity domain-fracture
Language:Python 5
basiralab / SM-netFusion-PY
Supervised graph diffusion and fusion.
network-atlas sm-netfusion graph-data diffusion brain-network graph-diffusion data-fusion data-integration manifold-learning clustering supervised-learning brain-connectivity brain-connectome graph-fusion machine-learning network-neuroscience computer-aided-diagnosis
Language:Jupyter Notebook 5
basiralab / topoGAN
Multigraph generation from a source graph.
multigraph-generation generative-learning gnns graph-neural-network adversarial-learning graph-convolutional-networks graph-topology brain-connectivity multiview-data multiview-connectome
Language:Python 5
heitorbaldo / PyPDC
PyPDC is a Python package to perform asymptotic Partial Directed Coherence estimations for brain connectivity analysis.
pdc brain-connectivity
Language:Python 5
WenChentao / Seg2Link
Napari-based 3D cell segmentation software using machine learning predictions as inputs, especially for EM image stacks of brains
deep-learning machine-learning cell-segmentation brain-connectivity em-images
Language:Python 5