skull-stripping

There are 2 repositories under skull-stripping topic.

quqixun / BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
brain mri preprocessing fsl registration skull-stripping brain-segmentation ants enhancement bias-field-correction
Language:Python 184
MaciejMazurowski / brain-segmentation
Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net
deep-learning brain-segmentation unet python mri-images keras trained-weights matlab dsc brain-mri skull-stripping
Language:Python 126
WCHN / CTseg
Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.
ct-segmentation ct-images spm ct-registration skull-stripping neuroimage
Language:MATLAB 53
vanandrew / brainextractor
A re-implementation of FSL's Brain Extraction Tool in Python
neuroscience neuroimaging segmentation python image-processing brain-extraction skull-stripping fsl
Language:Python 32
nipype-preprocess-on-brain-MR
NatLee / nipype-preprocess-on-brain-MR
The project is used to do preprocessing on brain MR images by using Nipype.
brain mri mr medical-image-processing skull-stripping fsl ants registration enhancement segmentation bias-field-correction pipeline brain-mri brain-imaging brain-segmentation acpc dockerfile nipype python
Language:Python 31
BrainMaGe
CBICA / BrainMaGe
Brain extraction in presence of abnormalities, using single and multiple MRI modalities
pytorch pytorch-lightning python neuroimaging brain-extraction nih deep-learning machine-learning skull-stripping segmentation
Language:Python 30
WuChanada / StripSkullCT
Extract brain and remove skulls from brain CT and CTA images
skull-stripping ct cta brain-extraction
Language:MATLAB 25
deepbet
wwu-mmll / deepbet
Fast brain extraction using neural networks
brain-extraction deep-learning neuroimaging python segmentation skull-stripping
Language:Python 20
Pramod04121999 / Pipelined-Tumor-Segmentation
A complete pipelined automatic process for skull stripping and tumor segmentation from Brain MRI using Thresholding.
thresholding-algorithm skull-stripping tumor-segmentation brain-mri image-analysis
Language:MATLAB 13
arekmula / skull_stripping
Skull stripping - Image processing project (PUTvision @ Poznan University of Technology, Institute of Robotics and Machine Intelligence)
segmentation mri skull-stripping skull t1 tensorflow unet efficientnet keras pytorch nifti jupyter-notebook jupyter
Language:Python 8
TIO-IKIM / k-Strip
k-strip: A novel segmentation algorithm in k-space for the application of skull stripping
ai k-space ml mri python skull-stripping cvnn
Language:Python 4
PrathamLearnsToCode / Alzheimer_ensemble_transfer_learning
Alzheimer prediction using Ensemble Transfer Learning
alzheimer-disease-prediction alzheimers-disease brain crop ensemble-learning mild-cognitive-impairment mri oasis skull skull-stripping transfer-learning
Language:Jupyter Notebook 3
FahimFBA / skull-stripping-3D-brain-mri
Apply Skulll Stripping to any 3D Brain MRI images
mri mri-brain mri-images skull skull-stripping
Language:Jupyter Notebook 2
Safaa-p / Segmentation-Preprocessing-of-medical-images
segmentation & preprocessing of medical images (sclérose en plaques )
computer-vision filter histogram-equalization noiseremoval normalization regiongrowing segmentation skull-stripping thresholding
Language:Jupyter Notebook 2
VitoLin21 / Rodent-Skull-Stripping
A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data
brain mri-images rodent skull-stripping
Language:Python 2
sergivalverde / PARIETAL
PARIETAL: Yet another deeP leARnIng brain ExTrAtion tooL
deep-learning medical-imaging brain skull-stripping
Language:Jupyter Notebook 1
Skwarson96 / skull_stripping_project
python brain neutralnetworks segmentation skull-stripping
Language:Jupyter Notebook 1
SonicStrain / skull-stripping-using-deepbrain
3d-image skull-stripping
Language:Jupyter Notebook 1
kolaszko / brain_segmentation
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deep-learning brain-segmentation skull-stripping unet unet-keras
Language:Python 0
SlicerCBM / SlicerFreeSurferCommands
Run FreeSurfer commands within 3D Slicer
3d-slicer-extension freesurfer segmentation skull-stripping
Language:Python 0