Jacob Reinhold (jcreinhold)

jcreinhold

Geek Repo

Company:Meta

Location:New York, NY

Home Page:jcreinhold.com

Twitter:@JacobCReinhold

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Jacob Reinhold's repositories

intensity-normalization

normalize the intensities of various MR image modalities

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niftidataset

pytorch dataset class for reading and transforming NIfTI files

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synthtorch

deep neural network-based image translation/synthesis

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counterfactualms

counterfactuals for magnetic resonance images of multiple sclerosis

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selfsupervised3d

methods to support self-supervised learning with 3D images

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pymedio

read arbitrary medical image formats with python

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tiramisu-brulee

A 2D and 3D PyTorch implementation of the Tiramisu CNN

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pyrobex

python bindings for ROBEX brain extraction

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uncertaintorch

uncertainty-based synthesis and segmentation in pytorch

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lesion-metrics

metrics for evaluating lesion segmentations

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annom

anomaly detection support for synthesis in pytorch

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lesionqc

calculate quality metrics for lesion segmentation results

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msseg

Multiple sclerosis T2 lesion segmentation

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replica

synthesize MR brain images via a random forest

synthit

an amalgam of (non-DNN-based) MR brain synthesis routines

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cookiecutter-pypackage

Cookiecutter template for a Python package.

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dicom-numpy

Properly generate a 3D numpy array from a set of DICOM files.

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nimanifold

nonlinear dimensionality reduction exploration for medical image datasets

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niwidgets

Neuroimaging widgets for jupyter notebooks

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numpy

The fundamental package for scientific computing with Python.

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nyc-home-cost-calculator

Simulate long-term costs of buying and renting in New York City

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owl

Owl - OCaml Scientific Computing @ http://ocaml.xyz

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OwlPPL

Final Year Project - A probabilisitic programming language in OCaml

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synthqc

quality analysis/control for synthesis

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torchio

TorchIO: medical imaging for deep learning.

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