jcreinhold

intensity-normalization

normalize the intensities of various MR image modalities

niftidataset

pytorch dataset class for reading and transforming NIfTI files

synthtorch

deep neural network-based image translation/synthesis

counterfactualms

counterfactuals for magnetic resonance images of multiple sclerosis

selfsupervised3d

methods to support self-supervised learning with 3D images

pymedio

read arbitrary medical image formats with python

tiramisu-brulee

A 2D and 3D PyTorch implementation of the Tiramisu CNN

pyrobex

python bindings for ROBEX brain extraction

uncertaintorch

uncertainty-based synthesis and segmentation in pytorch

lesion-metrics

metrics for evaluating lesion segmentations

annom

anomaly detection support for synthesis in pytorch

lesionqc

calculate quality metrics for lesion segmentation results

msseg

Multiple sclerosis T2 lesion segmentation

replica

synthesize MR brain images via a random forest

synthit

an amalgam of (non-DNN-based) MR brain synthesis routines

cookiecutter-pypackage

Cookiecutter template for a Python package.

dicom-numpy

Properly generate a 3D numpy array from a set of DICOM files.

dotfiles

EconML

jcreinhold

jcreinhold.github.io

nimanifold

nonlinear dimensionality reduction exploration for medical image datasets

niwidgets

Neuroimaging widgets for jupyter notebooks

numpy

The fundamental package for scientific computing with Python.

nyc-home-cost-calculator

Simulate long-term costs of buying and renting in New York City

owl

Owl - OCaml Scientific Computing @ http://ocaml.xyz

OwlPPL

Final Year Project - A probabilisitic programming language in OCaml

synthqc

quality analysis/control for synthesis

torchio

TorchIO: medical imaging for deep learning.