Spinal Cord Toolbox's repositories
spinalcordtoolbox
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
manual-correction
Scripts for the manual correction of spinal cord labels
sct_docker
Docker distribution of Spinal Cord Toolbox
PAM50-normalized-metrics
Spinal cord morphometry in the PAM50 template space
pediatric-template
Repository for generating pediatric template
disc-labeling-hourglass
Labeling of intervertebral discs using the Hourglass deep learning architecture.
exvivo-template
High resolution ex-vivo MRI template of the cervical spinal cord.
sct_testing_data
Very light data for testing the spinalcordtoolbox
sct_tutorial_data
Data and scripts for SCT's tutorials and courses
data-template
Template repo for making datasets we can include as pythonic dependencies of SCT.
template-dog
Repository to create spinal cord template of dogs. Data from VirginiaTech.
build_ANTs
Repo for building and hosting the C++ ANTs binary files used by SCT
build_biomedia_stitching
This is a repository to facilitate the integration of BioMedIA's stitching module for spinal cord toolbox.
deepseg_keras_onnx_conversion
Convert SCT's deepseg_{sc, gm, lesion} Keras HDF5 models into .ONNX representations
disc-labeling-benchmark
Development of a disc labeling benchmark on MRI images
disc-labeling-list
Awesome list of vertebral labeling methods
doc-figures
Repository that contains most figures for spinalcordtoolbox documentation.
docker-tensorflow-builder
Docker images to compile TensorFlow (for non-AVX TF wheels used by SCT)
jupyter-book
Jupyter Book demo
spinalcordtoolbox-binaries
Repo for packaging and hosting the C++ dependencies used by spinalcordtoolbox
spinalcordtoolbox-dev
A backup of the `dev/` folder from the Spinal Cord Toolbox repository.
template_AMU7T
Data repository containing the AMU7T atlas and template