brain-segmentation

There are 4 repositories under brain-segmentation topic.

quqixun / BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
brain mri preprocessing fsl registration skull-stripping brain-segmentation ants enhancement bias-field-correction
Language:Python 184
DeepBrainSeg
koriavinash1 / DeepBrainSeg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
biomedical-image-analysis deep-learning brats ensemble-learning deep-convolutional-neural-networks brain-tumor-segmentation segmentation artificial-intelligence medical-image-analysis brain-segmentation brain-tumor
Language:Python 180
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 161
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks densenet fcn hyperdensenet image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation multi-modal-imaging neural-networks segment-medical-images segmentation theano
Language:Python 148
ENHANCE-PET / MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
pet-ct organ-segmentation nnunet 3d-segmentation bone-segmentation tb-pet brain-segmentation fat-segmentation muscle-segmentation psoas-segmentation ct-segmentation total-body-segmentation
Language:Python 133
MaciejMazurowski / brain-segmentation
Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net
deep-learning brain-segmentation unet python mri-images keras trained-weights matlab dsc brain-mri skull-stripping
Language:Python 124
NYUMedML / DARTS
Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation
brain-segmentation freesurfer deep-learning unet pytorch brain-mri medical-imaging artificial-intelligence
Language:Jupyter Notebook 67
ai-med / QuickNATv2
Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
deep-learning neuroscience neuroanatomy-toolbox brain-segmentation
Language:MATLAB 61
volBrain / AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
neuroscience neuroimaging brain-imaging medical-imaging deep-learning neuroanatomy brain-segmentation mri mri-segmentation nifti neurodegenerative-diseases dementia alzheimer parkinson schizophrenia autism docker
43
nipype-preprocess-on-brain-MR
NatLee / nipype-preprocess-on-brain-MR
The project is used to do preprocessing on brain MR images by using Nipype.
brain mri mr medical-image-processing skull-stripping fsl ants registration enhancement segmentation bias-field-correction pipeline brain-mri brain-imaging brain-segmentation acpc dockerfile nipype python
Language:Python 31
Macatools / macapype
PNH segmentation pipelines based on nipype
python nipype mri-segmentation primate afni ants spm12 fsl mri mri-analysis brain-extraction brain-segmentation mesh
Language:Python 20
shivangi-aneja / Multi-Modal-Brain-Segmentation
3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning
3d-gan 3d-unet adversarial-learning brain-segmentation cnn segmentation semi-supervised-learning
Language:Python 19
AICONSlab / iCVMapp3r
AICONSlab's brain extraction (skull-stripping) algorithm using CNNs
medical-imaging cnn image-processing deep-learning neuroimaging mri brain-segmentation python3 neuroscience
Language:Python 16
AICONSlab / VentMapp3r
AICONSlab's ventricular segmentation technique using CNNs
medical-imaging deep-learning brain-segmentation mri cnn ventricle python3
Language:Python 10
peirong26 / Brain-ID
Learning Contrast-agnostic Anatomical Representations for Brain Imaging
brain brain-segmentation data-simulation foundation-models mri representation-learning task-agnostic
Language:Python 9
leslie-zi-pan / WMH_Segmentation_ipynb
Brain white matter hyperintensity segmentation, with T1 and FLAIR MRI images, using UNet.
dementia dementia-diagnosis white-matter-hyperintensities white-matter-segmentation brain-segmentation unet unet-pytorch pytorch deep-learning monai
Language:Jupyter Notebook 4
Vivikar / brain-segmentation
This repository contrains source code and the report for the Brain Segmentation challenge. It was the final assignment for the Medical Image Segmentation and Analysis course at the University of Girona for the MAIA programme.
brain-segmentation deep-learning maia python pytorch pytorch-lightning u-net
Language:Jupyter Notebook 4
CRazorback / OHSR
[MICCAI'23] "Learning Ontology-Based Hierarchical Structural Relationship for Whole Brain Segmentation".
brain-segmentation metric-learning
Language:Python 3
asyrofist / brain-segmen
This project shows a simple way to segment a brain MRI image
cluster machine-learning brain-segmentation morphology
Language:Jupyter Notebook 2
aqntks / brain-seg
Brain Segmentation
brain-segmentation 3d-segmentation mri-images brats monai
Language:Python 0
CindyZJT / UMM-Net
brain-segmentation mri-volumes
0
FelixGunzer / JCD_thesis
Radiological-anatomical distribution patterns of Jakob-Creutzfeldt disease in relation to functional cortical systems
prions creutzfeldt jakob-creutzfeldt-disease brain-segmentation brodmann-area-labeling aal spm12 radiology mri-segmentation mri
0
kolaszko / brain_segmentation
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deep-learning brain-segmentation skull-stripping unet unet-keras
Language:Python 0
musimab / Unet_brain_segmentation
unet brain segmentation with pytorch c++
unet-pytorch brain-segmentation torchscript
Language:C++ 0
SiyangJ / MacaqueSeg
Macaca Mulatta brain tissue segmentation project with prof. Martin Styner.
deep-learning cnn brain-segmentation medical-imaging macaque-brain