NeuroImaging PREProcessing toolS

NeuroImaging PREProcessing toolS's repositories

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

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mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

Language:PythonApache-2.0342 15 718

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

Language:PythonApache-2.0151 14 192

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

Language:PythonApache-2.0104 16 250

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

Language:PythonApache-2.043 10 174

nibabies

fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

Language:PythonApache-2.036 8 175

fmripost-aroma

Run ICA-AROMA on fMRIPrep derivatives

Language:PythonApache-2.021 5 52

petprep

PETPrep: A Robust Preprocessing Pipeline for PET Data

Language:Jupyter NotebookApache-2.013 5 1

synthstrip

Synthstrip integration to be used across nipreps

Language:PythonApache-2.012 3 3

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

Language:PythonApache-2.010 4 58

nifreeze

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

Language:PythonApache-2.05 5 59