WUSM Human Connectome Project's repositories
HCPpipelines
Processing pipelines for the HCP
cifti-matlab
MATLAB code for reading and writing CIFTI connectivity files
gradunwarp
Gradient Unwarping in Python
NHPPipelines
Enhancements of HCP Pipelines for non-human primates
HCPpipelinesDocker
Files related to running the HCP Pipelines using Docker
megconnectome
MEG data processing pipelines for the HCP Young Adult project
wb_shortcuts
Script for common short wb_command sequences
xnat_utilities
Some utilities for working with XNAT from the command line
hcp_functional_qc_pipeline_customizations
HCP Functional QC (aka Level2QC) pipeline
HCPpipelinesRunUtils
Utilities for running and checking completion status of HCP Pipelines
HCPpipelinesSingularity
Files related to running the HCP Pipelines using Singularity
xnat_pbs_jobs
Scripts to run HCP Pipelines as XNAT aware PBS scheduled jobs
at_cmd_utils
Utility scripts for the at command
CHPC_QuNex_RunUtils
Scripts and parameters files for running Qu|Nex container on the CHPC
get-data-for-vetting
Utility scripts to retrieve data from Connectome DB resources and place them in shared directories for examination and vetting
HAWG-examples
HAWG example JSON files
hcp_functional_qc_tools
Python based scripts required for Functional QC Pipeline (aka Level2QC Pipeline) for HCP-IntraDB
hcp_functional_qc_xnat_plugin
XNAT pages required for HCP QC as a plugin
xnat_pbs_jobs_control
Control files for the scripts in the xnat_pbs_jobs repository