nifti-format

There are 1 repository under nifti-format topic.

• rordenlab / dcm2niix

  dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

  dicomniftimrimri-imagesresearchneuroscienceneuroimagingjpeg-imagejpegdicom-imagesdcmniigznitrcdcm2niixmricroglbids-formatnifti-format
  Language:C++ 802

• FNNDSC / ami

  AMI Medical Imaging (AMI) JS ToolKit

  medicaljavascriptthreejsamivolume-renderingdicom-imagesdicomnifti-formatnrrdniftivtkstltrkfswebglxtk
  Language:JavaScript 700

• loli / medpy

  Medical image processing in Python

  medicalpythonmedpyimage-processingmachine-learningfeature-extractiongraph-cutmagnetic-resonance-imagingnifti-formatitksimpleitkmhamhddicom4d3d2dimage-classificationimage-segmentationcomputed-tomography
  Language:Jupyter Notebook 544

• neurolabusc / nii2mesh

  Convert NIfTI volume to triangulated mesh using marching cubes

  3dmarching-cubesmedical-imagingmesh-generationmesh-simplificationmri-imagesnifti-formatobj-format
  Language:C 116

• neurolabusc / MRIcron

  Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprietary formats.

  nifti-formatdicom
  Language:Pascal 66

• neurolabusc / MRIcroGL10_OLD

  DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL

  volume-renderingvolume-ray-castingdicomnifti-formatdeprecatedobseletearchived
  Language:Pascal 57

• josedolz / SemiDenseNet

  Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.

  3dcnnconvolutional-networksconvolutional-neural-networksdeep-learninginfant-brain-segmentationmedical-image-processingmedical-imagingmrinifti-formatpythonsemidensenettheano
  Language:Python 55

• tomaroberts / nii2dcm

  nii2dcm: NIfTI to DICOM creation with Python

  dicomdicom-imagesimagingdcmgzniimrimri-imagesfile-conversionniftinifti-formatresearch
  Language:Python 48

• as791 / Multimodal-Brain-Tumor-Segmentation

  Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.

  semantic-segmentationbrats-challengeunet-image-segmentationpython3jupyter-notebookcolaboratorymri-segmentationnifti-gznifti-formatbratsbrain-tumor-segmentation
  Language:Jupyter Notebook 45

• jonclayden / RNifti

  Fast R and C++ access to NIfTI images

  medical-imagingnifti-formatr
  Language:C 43

• Enet4 / nifti-rs

  Rust implementation of the NIfTI-1 format

  hacktoberfestmedical-imagingneuroimagingniftinifti-formatrust
  Language:Rust 36

• rordenlab / MRIcroWeb

  NIfTI volume rendering using WebGL

  nifti-formatvolume-ray-castingvolume-rendererwebgl2
  Language:JavaScript 35

• rordenlab / nii2meshWeb

  Online NIfTI voxels to triangulated mesh conversion

  3dmarching-cubesmedical-imagingmesh-generationmesh-simplificationmrinifti-formatobj
  Language:C 17

• pranath / predict_alzheimers

  In this project I develop a deep learning CNN model to predict Alzheimer's disease using 3D MRI medical images of the Hippocampus region of the brain.

  mri-imagealzheimer-diseasehippocampusbrainkeras-tensorflowdeep-learning3d-medical-images3d-medical-imagenifti-formatnifti-imagesmedical-imagingmedical-image-processingmedical-image-analysismedical-image-segmentation
  Language:Jupyter Notebook 12

• plwp / Nifti.NET

  A basic library for reading, writing and manipulating NIfTI files.

  niftinifti-formatdotnet-standard
  Language:C# 10

• okieraised / gonii

  Standalone NIfTI file parser

  medical-imagingniftinifti-1nifti-2nifti-formatnifti-gznifti-imagesnii
  Language:Go 8

• deepc-health / nekton

  A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion

  niftinifti-formatdicomgspsdicom-segmedical-imaging
  Language:Python 7

• dsdanielpark / EDA-NIf

  Tool for Exploratory Data Analysis of Neuroimaging Informatics Technology Initiative(NIfTI) format

  ctimagemedical-image-analysismri-imagesnifti-formatniipypi-package
  Language:Python 2

• addisonElliott / nifticlib

  Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

  niftinifti-formatclibrarymedical-imagingmedicalmri-imagesmrifmrifmri-image-slices
  Language:C 1

• Enet4 / dicoogle-nifti

  NIfTI-1 file converter for Dicoogle

  dicooglenifti-formathacktoberfest
  Language:Java 1

• SIUE-BiomedicalImagingResearchLab / SIUE-Fat-Segmentation-Tool

  This program will take in MRI images in the NIFTI format and display them on the screen. The user will draw a closed contour around specified areas of fat at multiple axial slices. These results are saved in a file to be validated with the VisceralFatSegmentation program. This program is created using Qt and C++.

  adipose-tissuefatguimri-imagesnifti-formatopencv-library
  Language:C++ 1

• sulagnag / Udacity_AI_Healthcare_P2_Hippocampus-Volume-Quantification

  hippocampus volume quantification

  healthcarehippocampusnifti-formatdicom-imagesrecursive-neural-networks
  Language:Jupyter Notebook 1

• txusser / anapyze

  A set of tools for medical imaging processing and analysis that I have been crafting over the years

  medical-image-processingneuroimaging-analysisnifti-format
  Language:Python 0

• yousef-seyfari / Computational-Neuroscience

  This repository contains some codes for the computational neuroscience.

  asdautismcomputational-neuroimagingcomputational-neurosciencefmrifmri-data-analysisfmri-preprocessingconvertdicomdicom-imagesniftinifti-formatspm5
  Language:Jupyter Notebook 0

• wtclarke / nifti_mrs_tools

  Software tools for the NIfTI-MRS data format

  mrsmrsinifti-format
  Language:Python