There are 2 repositories under connectome topic.
Graph theory analysis of brain MRI data
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
A unified framework for skeletonization, morphological analysis, and connectivity analysis.
A Hugo theme with backlinks for online communities
Please use the new version of LiFE: www.github.com/brain-life/encode
A prediction-based extension of network-based statistics.
A multipurpose matlab-based MEG/EEG overlay & network plotter
Tools to work with the FlyWire connectome. Fully interoperable with navis.
Efficient meta learning of synaptic plasticity from experimental data using artificial neural network models
Code for implementing the Aggregation-Network diffusion model (AND), as described in the paper: "Combined Model of Aggregation And Network Diffusion Recapitulates Alzheimer’s Regional Tau-PET " by Ashish Raj*, Veronica Tora, Xiao Gao, Hanna Cho, Jae Yong Choi, Young Hoon Ryu, Chul Hyoung Lyoo, Bruno Franchi. *Department of Radiology and Biomedical Imaging, University of California at San Francisco
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
Meta-learning using graph neural networks for brain connectivity regression.
Spectral graph model base code and examples
A paper investigating bilateral symmetry of connectome networks.
Fast and easy visualization of fMRI data quality using carpet plots.
An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment
EM segmentation of mitochondria from SNEMI3D data
maintainance of the code for complex network analysis based modeling of Event Related Potential (ERP) electroencephalography (EEG) data from baby brain, can be applied to other data, including human brain.
Methods for estimating time-varying functional connectivity (TVFC)
A package for handling and plotting brain connectomes obtained thorugh tractography.
Python 3 implementations of various Functional Connectivity measures
Connectocross: statistical characterizations and comparisons of nanoscale connectomes across taxa (A paper in progress)
Cartographical collection of cortical atlases (neuroscience)