fmri

There are 22 repositories under fmri topic.

nilearn / nilearn
Machine learning for NeuroImaging in Python
brain-connectivity brain-imaging brain-mri decoding fmri machine-learning mvpa neuroimaging python
Language:Python 1107
nipreps / fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
fmri fmri-preprocessing brain-imaging neuroimaging bids image-processing
Language:HTML 600
gallantlab / pycortex
Pycortex is a python-based toolkit for surface visualization of fMRI data
fmri neuroimaging python surface-visualization
Language:JavaScript 555
brainiak / brainiak
Brain Imaging Analysis Kit
neuroscience fmri machine-learning distributed neuroimaging
Language:Python 322
translationalneuromodeling / tapas
TAPAS - Translational Algorithms for Psychiatry-Advancing Science
computational psychiatry behavioral neuroscience psychosomatics neurology statistical-learning bayesian-inference hierarchical-models fmri eeg
Language:MATLAB 202
cwatson / brainGraph
Graph theory analysis of brain MRI data
graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks brain-imaging connectomics tractography fmri
Language:R 163
tedana
ME-ICA / tedana
TE-dependent analysis of multi-echo fMRI
brain-imaging fmri neuroimaging python
Language:Python 157
NeuroRA
ZitongLu1996 / NeuroRA
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
python-toolbox representation-similarity rsa neural-data eeg meg fmri ecog seeg fnirs electrophysiology representational-analysis stps isc decoding classification nps
Language:Python 150
canlab / CanlabCore
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
fmri neuroscience machine-learning connectivity mediation meta-analysis matlab canlab toolboxes
Language:MATLAB 141
cosanlab / nltools
Python toolbox for analyzing imaging data
multivariate machine-learning python toolbox neuroimaging-data python-toolbox fmri
Language:Python 120
dPys / PyNets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
workflow nipype dipy nilearn tractography fmri dmri ensemble-sampling networks brain-connectivity gridsearch networkx optimization ensemble-learning multiverse fuzzy-logic decision-trees graph-neural-networks
Language:Python 117
dyconnmap
makism / dyconnmap
A dynamic connectome mapping module in python.
neuroimaging eeg fmri meg connectivity time-varying graphs fc-states dynamic functional-connectivity graph-analysis connectome python graph-distances clustering neuroscience
Language:Python 96
NeuroVault / NeuroVault
Easy to use web database for statistical maps.
brain-imaging statmaps fmri cognitive-concepts open-source django
Language:Python 92
pelednoam / mmvt
The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data
meg fmri multi-modality-visualization 3d-visualization visualization neuroimaging-data
Language:Shell 84
wiheto / teneto
Temporal Network Tools
temporal-networks community-detection bids networks fmri neuroscience network-theory temporal-network-theory python time-varying-connectivity dynamics
Language:Python 84
bioimagesuiteweb / bisweb
This is the repository for the BioImage Suite Web Project
webassembly neuroimaging-analysis medical image-processing nifti viewer fmri nih-brain-initiative
Language:JavaScript 76
stagin
egyptdj / stagin
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
neuroimaging connectome fmri graph-neural-network gnn attention explainability stagin neurips neurips2021
Language:Python 73
raamana / visualqc
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
neuroimaging anatomical-mri cortex neuroscience quality-control freesurfer mri-images medical-imaging outlier-detection fmri qc outlier-removal registration alignment
Language:Python 72
automaticanalysis / automaticanalysis
Automatic Analysis (aa)
big-data dataflow diffusion eeg fmri matlab neuroimaging parallel-computing pipeline workflow-automation workflow-engine
Language:MATLAB 70
NSBLab / BrainEigenmodes
Code supporting 'Geometric constraints on human brain function'
brain-function brain-imaging computational-neuroscience eigenmodes fmri modeling neuroscience
Language:MATLAB 69
JuliaNeuroscience / NIfTI.jl
Julia module for reading/writing NIfTI MRI files
nifti julia mri-images fmri mri
Language:Julia 68
paulcbogdan / NiChord
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
connectivity fmri networks python visualization
Language:Python 64
trendscenter / gift
Group ICA/IVA software (MATLAB)
ica iva fmri eeg smri matlab gifttoolbox nifti-gz nifti-2 nifti-1 analyze pca group-pca group-analysis
Language:MATLAB 63
connectomemapper3
connectomicslab / connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
bids bidsapp dmri fmri connectome bids-apps pipelines chuv brain parcellation python eeg docker singularity
Language:HTML 61
HALFpipe / HALFpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
neuroimaging reproducibility pipeline meta-analysis bids fmri
Language:Python 60
miykael / fmriflows
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
python neuroimaging fmri bids
Language:MATLAB 59
spm / spm
SPM (Statistical Parametric Mapping) - Development Version
matlab neuroscience neuroimaging spm eeg fmri meg pet spect mapping parametric statistical opm nifti brain dcm vbm
Language:MATLAB 58
deontaepharr / Diagnosing-ADHD-With-ConvLSTM
Classifying ADHD fMRI data with a CNN+LSTM Model
keras tensorflow medical-imaging fmri deep-learning convolutional-neural-networks lstm conv-lstm neuroimaging
Language:Jupyter Notebook 56
network_TDA_tutorial
multinetlab-amsterdam / network_TDA_tutorial
This repository is dedicated for the tutorial on network and topological neuroscience.
tda graph-theory topological-data-analysis fmri neuroscience neuroimaging
Language:HTML 55
hans / nn-decoding
Brain decoding/encoding with neural network language models
fmri nlp cognitive-science neuroscience
Language:Jupyter Notebook 54
lukassnoek / NI-edu
Student version of NI-edu courses
fmri jupyter education python
Language:Jupyter Notebook 47
mschrimpf / neural-nlp
[PNAS'21] The neural architecture of language: Integrative modeling converges on predictive processing
deep-learning natural-language-processing computational-neuroscience human-language neural-recording fmri ecog
Language:Jupyter Notebook 47
Remi-Gau / advanced_fMRI_course
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
fmri spm matlab course-materials neuroimaging
Language:TeX 45
rufinv / VAE-GAN-CelebA
Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019
vae-gan vae gan tensorflow fmri brain-decoding face celeba-dataset
Language:Python 45
DCAN-Labs / abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
bids-format mri-images pipeline image-processing fmri fmri-preprocessing
Language:Python 44
markallenthornton / MatlabTFCE
Standalone MATLAB implementation of permutation TFCE correction
fmri fmri-data-analysis permutation
Language:MATLAB 42

fmri

nilearn / nilearn

nipreps / fmriprep

gallantlab / pycortex

brainiak / brainiak

translationalneuromodeling / tapas

cwatson / brainGraph

ME-ICA / tedana

ZitongLu1996 / NeuroRA

canlab / CanlabCore

cosanlab / nltools

dPys / PyNets

makism / dyconnmap

NeuroVault / NeuroVault

pelednoam / mmvt

wiheto / teneto

bioimagesuiteweb / bisweb

egyptdj / stagin

raamana / visualqc

automaticanalysis / automaticanalysis

NSBLab / BrainEigenmodes

JuliaNeuroscience / NIfTI.jl

paulcbogdan / NiChord

trendscenter / gift

connectomicslab / connectomemapper3

HALFpipe / HALFpipe

miykael / fmriflows

spm / spm

deontaepharr / Diagnosing-ADHD-With-ConvLSTM

multinetlab-amsterdam / network_TDA_tutorial

hans / nn-decoding

lukassnoek / NI-edu

mschrimpf / neural-nlp

Remi-Gau / advanced_fMRI_course

rufinv / VAE-GAN-CelebA

DCAN-Labs / abcd-hcp-pipeline

markallenthornton / MatlabTFCE