modenaxe

awesome-biomechanics

A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

msk-STAPLE

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

3d-muscles

Materials to reproduce the results of our paper about 3D muscle modelling.

MuscleParamOptimizer

Scripts and models to optimize musculotendon parameters in musculoskeletal models.

msk-bone-deformation

Bone deformation tool designed for applying torsional profiles to bones of musculoskeletal models used in OpenSim

MuscleForceDirection

Package to interface musculoskeletal models with finite element packages

auto-lowerlimb-models-paper

Data (bone geometries and gait analysis data) and scripts to reproduce the results and figures of the scientific publication specified in the README file.

femoral-anteversion-paper

Reproducibility package (repropack) for generating all the models, results and figures included in the referenced publication. We investigated the effect of femoral anteversion on the joint reactions of the lower limb and compared the results against the in vivo loading measured by an instrumented prosthesis (Grand Challenge Dataset).

ARS

An implementation of the Augmented Random Search algorithm

BeautifulAlgorithms.jl

Concise and beautiful algorithms written in Julia

brax

Massively parallel rigidbody physics simulation on accelerator hardware.

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 175 universities.

febio_exporter

Creation of FE models, suitable for FEBio Suite

FEBioStudio

GIBBON

The Geometry and Image-Based Bioengineering add-On for MATLAB

ISB21-workshop

Hands-on example for the workshop on optimal control in biomechanics at ISB 2021.

least-squares-ellipse-fitting

Fitting an Ellipse using a Least Squares method, in Python

LLLM

London Lower Limb Model repository

manim

Animation engine for explanatory math videos

ml-glossary

Machine learning glossary

modenaxe.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

nicegui

Create web-based interfaces with Python. The nice way.

nnUNet

numpy-100

100 numpy exercises (with solutions)

opensim-core-jam

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

PyGeM

Python Geometrical Morphing

pylustrator

Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.

reportlabbookcode

Code examples for the book, ReportLab: PDF Processing with Python

scikit-learn-mooc

scikit-learn-mooc

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.