individual-based-modelling

There are 3 repositories under individual-based-modelling topic.

• Agents.jl

  JuliaDynamics / Agents.jl

  Agent-based modeling framework in Julia

  simulation-frameworkagent-based-modelingagent-based-simulationagent-based-frameworkabmheterogeneous-agent-modelindividual-based-modellingcellular-automatajulialanghacktoberfestagentsjuliasimulationcomplex-systems
  Language:Julia 696
• arche

  mlange-42 / arche

  Arche is an archetype-based Entity Component System (ECS) for Go.

  ecsentity-component-systemgolanggoindividual-based-modelling
  Language:Go 107

• ropensci / nlrx

  nlrx NetLogo R

  peer-reviewednetlogoindividual-based-modellingagent-based-modelingrr-packagerstats
  Language:R 75

• ArroyoAndre / covidsimulation

  Covid Epidemics Simulation with Simpy

  pythoncythoncovid-19coronavirusepidemiologysimpyindividual-based-modellingagent-based-modelingagent-based-simulation
  Language:Python 29

• mrc-ide / individual

  R Package for individual based epidemiological models

  rr-packagerstatsepidemiologyagent-based-modelingindividual-based-modellinginfectious-diseases
  Language:R 29

• DiODeProject / MuMoT

  Multiscale Modelling Tool - mathematical modelling without the maths

  mathematical-modellingstatistical-mechanicsnonlinear-dynamicsbifurcation-analysisindividual-based-modellingstochastic-simulation-algorithm
  Language:Python 21

• DEMENT-Model / DEMENTpy

  A spatially explicit trait- and individual-based microbial systems modelling framework

  dementtraitmicroorganismbacteriafungiindividual-based-modellingenzymeecologycommunity-ecologysoilbiologydementpytrait-based-modellinglitterdecompositiontradeoffmicrobiomefungusgenomeomics
  Language:Python 13
• arche-model

  mlange-42 / arche-model

  Everything you need to rapidly build a model with the Arche Entity Component System (ECS).

  ecsentity-component-systemgogolangindividual-based-modelling
  Language:Go 11

• jacobnabe / DEPONS

  DEPONS model: Simulating effects of disturbances on the North Sea harbour porpoise population

  agent-based-modelingindividual-based-modellingharbour-porpoisepopulation-modelnoise-maps
  Language:Java 6

• rjzupkoii / PSU-CIDD-Malaria-Simulation

  Spatial individual-based model of malaria with a focus on drug resistance evolution.

  malariapublic-healthspatial-modellingindividual-based-modellingagent-based-modeling
  Language:C++ 5
• arche-pixel

  mlange-42 / arche-pixel

  OpenGL graphics and plots for the Arche Entity Component System (ECS).

  ecsentity-component-systemgogolangindividual-based-modelling
  Language:Go 4

• berndpanassiti / HostSwitch

  HostSwitch: An R Package to simulate host switching by a parasite

  ecologyevolutionstockholm-paradigmecological-fittingindividual-based-modelling
  Language:R 3

• marcosci / mini_taskview_ibm

  Taskview for all IBM related 📦 packages in the R universe

  rabmibmindividual-based-modellingagent-based-modelingagent-based-simulationagent-based-framework
  3

• rosemckeon / ploidy

  How does disturbance on a landscape affect the establishment of new polyploid plant species?

  individual-based-modellingrpolyploidydisturbanceplantsevolutionecologygenetics
  Language:R 3

• ap-browning / scratchIBM

  Supplementary material for "Identifying density-dependent interactions in collective cell behaviour"

  experimental-datascratch-assaysindividual-based-modelling
  Language:MATLAB 1

• babak2 / WHD

  cppindividual-based-modellingpk-pd-modelling
  Language:C++ 1

• cornejotux / MPA-and-fish-movement

  Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309

  mpafisheriesstockmarine-protected-areasfish-movementsimulationmpa-modelsmovement-assumptionsmarine-protected-areaibmindividual-based-modellingpopulation-dynamicsmsemanagementstrategyevaluation
  Language:C++ 1

• dgoto2 / SEIBMEarlyLife

  A spatially explicit individual-based model for fish early life histories

  individual-based-modellinglarval-fishmovement-ecologyearly-lifespatially-explicit-modelswater-circulation-controlsimulation-modelinglife-historiesrecruitmentdispersalfishagent-based-modeling
  Language:IDL 1

• johannes-lee / SIRD-vaccination

  Python individual-level SIRD model for studying vaccination prioritization

  covid19-simulationindividual-based-modellingsirdsird-modelvaccine-priority
  Language:Jupyter Notebook 1

• pratikunterwegs / pathomove

  Rcpp package providing an individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.

  animal-movementepidemiologyevolutionindividual-based-modellingsocial-network-analysisspatial-simulation
  Language:C++ 1

• RowanDurrant / DFTD

  Individual-based metapopulation model of devil facial tumour disease.

  individual-based-modellingmetapopulationdftd
  Language:R 1

• trondkr / Glomma_particles

  Repository for developing sediment module for OpenDrift for modeling flow of particles in Glomma

  driftindividual-based-modellinglagrangiansediment
  Language:Python 1

• bioatmosphere / UVAFMEVOC2017

  Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.

  lightcanopycrownphotosynthesisindividual-based-modellingforestcommunityradiationdiffuse-radiationshaded-leafsunlit-leafuvafmeuvafme-voc
  Language:R 0

• bonilab / malariaibm-spatial-Rwanda-561H

  Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.

  individual-based-modellingmalariapublic-healthrwandasimulationspaital-modeling
  Language:C++ 0
• puutools

  charlesrocabert / puutools

  Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

  artificial-life-simulationsc-plus-plus-libraryevolution-simulationevolutionary-algorithmsevolutionary-biologyforward-in-time-simulationindividual-based-modellinglineage-tracinglive-trackingphylogeneticsstatic-librarycoalescencelineage-treephylogenetic-treecoalescence-tree
  Language:C++ 0

• dgoto2 / SEIBMFoodWeb

  A spatially explicit individual-based food web model for a large ecosystem

  fisheries-managementindividual-based-modellingspatially-explicit-modelsfood-webslake-erieecosystem-modelingeutrophicationsimulation-modelingecosystemagent-based-modeling
  Language:IDL 0

• dgoto2 / SEIBMRiverFish

  A spatially explicit (1D) individual-based model for large river fish

  individual-based-modellingfisheries-managementpopulation-dynamicsspatially-explicit-modelssimulation-modelingshovelnose-sturgeonriveragent-based-modeling
  Language:IDL 0

• FelixNoessler / Buffers-or-corridors-for-great-crested-newts

  Individual based-model to determine which management option (buffers or corridors between ponds) is better for promoting the population of newts.

  individual-based-modellingnetlogopopulation-dynamicspopulation-model
  Language:Jupyter Notebook 0

• FelixNoessler / Individuals-based-modelling-with-RangeShiftR

  Individual-based model of a theoretical reintroduction of wild boars in France

  ecological-modellingindividual-based-modellingr
  Language:R 0

• fsfrazao / Trees

  Python package for implementing individual-based forest models

  forestindividual-based-modellingmodelling
  Language:Python 0

• jacobnabe / PorpoiseModel

  Individual-based model for assessing the effects by-catch, ship noise etc. on harbour porpoises in the inner Danish waters

  agent-based-modelingharbour-porpoise-populationindividual-based-modellinginner-danish-watersnoisepopulation-dynamics
  Language:NetLogo 0

• jpleet / ebeeb

  System to simulate individual interactions and capture ecological and evolutionary dynamics

  ecologyevolutionindividual-based-modellingpredator-preylotka-volterraevolutionary-dynamicsecological-models
  Language:Jupyter Notebook 0

• julianemailly / BeeProject

  This repository contains my Master's internship project which aims at developing an individual-based model of foraging in pollinators.

  animal-cognitionpollinatorsindividual-based-modellingmodellingforaging-behaviour
  Language:R 0

• olledejong / DAISIEsims

  Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.

  biological-modelingcppindividual-based-modellingrrcpp
  Language:R 0

• wtennant / arbo_gpu_fit

  Fitting a stochastic individual based model for arboviral disease.

  epidemiological-modelsepidemiologyindividual-based-modellingindividual-mosquitoesmcmcmeta-populationmodel-fitting
  Language:C++ 0

• bonilab / malariaibm-spatial-BurkinaFaso-2021

  Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.

  burkina-fasoindividual-based-modellingmalariapublic-healthspaital-modeling
  Language:C++