lineage-tracing
There are 0 repository under lineage-tracing topic.
kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
Language:R 157YosefLab / Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Language:Python 74chenweng1991 / redeemR
R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
Language:Jupyter Notebook 8shadowdeng1994 / TarCA
TarCA is an R package used for inferring the number of progenitors of the focal cell population based on the cell phylogeny.
Language:R 7asalavaty / AutoClone
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
Language:R 2raphael-group / LAML
LAML is a maximum likelihood algorithm to infer cell phylogeny from dynamic lineage tracing data
Language:Python 2scDiffEq / LARRY-dataset
Documentation associated with preparing and formatting datasets LARRY datasets for ML applications with pytorch / pytorch lightning
Language:Jupyter Notebook 2caravagnalab / lineaGT
Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
Language:R 1- Language:Python 1
- puutools
charlesrocabert / puutools
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
Language:C++ 0 liviuspenter / ONT-lineage-tracing
Analyses of Penter, Borji & Nagler et al., 2023
Language:R 0- Language:Python
