biological-modeling

There are 1 repository under biological-modeling topic.

SelfishGene / neuron_as_deep_net
Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
deep-learning convolutional-neural-networks biological-modeling neuroscience-inspired-ai neuroscience-data
Language:Python 135
SciML / FiniteStateProjection.jl
Finite State Projection algorithms for chemical reaction networks
chemical-reaction-networks finite-state-projection biological-modeling julia-package systems-biology stochastic-simulations gillespie-algorithm gene-network
Language:Julia 18
mjg211 / phaseR
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
biological-modeling differential-equations dynamical-systems ecological-modelling lotka-volterra manifolds modeling-dynamic-systems morris-lecar perturbation-analysis phase-plane sir-model species-interactions van-der-pol
Language:R 15
santiago1234 / iCodon
iCodon customizes gene expression based on the codon composition
computational-biology bioinformatics biological-modeling gene-expression mrna-stability icodon
Language:R 13
SelfishGene / filter_and_fire_neuron
Code behind the work "Multiple Synaptic Contacts Combined with Dendritic Filtering Enhance Spatio-Temporal Pattern Recognition of Single Neurons", bioRxiv 2022
neuroscience neuroscience-inspired-ai pattern-recognition biological-modeling biological-neural-networks
Language:Python 8
arnaudporet / kali
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
biological-modeling biological-networks biological-simulation boolean-networks computational-biology drug-discovery in-silico regulatory-networks therapeutic-targets
Language:Go 5
openPfizer / vpop-gen
Virtual population generation, fitting, and benchmarking.
quantitative-systems-pharmacology biological-modeling virtual-population ode-model genetic-algorithm global-optimization metropolis-hastings monte-carlo-sampling acceptance-rejection qsp
Language:MATLAB 4
LoLab-MSM / Gleipnir
Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling
nested-sampling parameter-estimation model-selection systems-biology biological-modeling bayesian-methods python
Language:Python 3
Ansh-Sarkar / LiV_DAM-And-VU_SAM-Simulations
A Game Theoretic Approach For Rendering Immersive Experiences In The Metaverse
biological-modeling game-theory game-theory-algorithms metaverse
Language:Python 1
AryamanReddi99 / Creature-Forest
Simulation of agents competing for resources with different strategies
game-theory prisoners-dilemma nash-equilibrium decision-theory biological-modeling behaviour-analysis
Language:Jupyter Notebook 1
danielgrimland / Sea_Urchin_Endomesoderm_GRN
Sea Urchin Endomesoderm GRN Modeling and Testing of Model Behavior and Robustness under Genetic Perturbations
bioinformatics biological-modeling
Language:Python 1
mauricelanghinrichs / memocell
Bayesian inference of stochastic cellular processes with and without memory in Python.
bayesian-inference stochastic-processes biological-data-analysis python biological-modeling model-selection parameter-estimation stochastic-models probabilistic-models dynamical-systems nested-sampling master-equation gillespie-algorithm markov-model statistical-inference
Language:Python 1
newmanjb / TheBody
An object-oriented model of the workings of the human body written in java and scala
biological-simulations biological-modeling biology-education
Language:Java 1
Physics-Simulations / Hodgkin-Huxley-model
4 dimensional model for neuronal modelling in Julia
neuroscience differential-equations biological-modeling
Language:Jupyter Notebook 1
TommyGiak / biological_PINN
Implementation of a PINN solver for biological differential equations
bioinformatics biological-modeling differential-equations machine-learning pinn
Language:Python 1
YogeshPhalak / Natural-Pattern-Adaptation-CA
A repository for the final project in MathBio class, exploring the dynamics of natural pattern adaptation through the lens of a cellular automata model. Contains code, documentation, and resources related to the project.
animal-coat-patterns biological-modeling cellular-automata computational-biology pattern-adaptation pattern-formation
Language:Python 1
AaronLiftig / CopsAndRobbers
A prototype of a probabilistic research model for a math professor. It is meant to simulate a white blood cell chasing a bacteria.
game model biological-modeling probablistic-models
Language:Python 0
arnaudporet / konect
Connecting nodes
biological-modeling biological-networks computational-biology graph-algorithms graph-analysis graph-traversal graphs network-algorithms network-analysis networks networks-biology path-analysis path-finding pathfinder pathfinding pathfinding-algorithms regulatory-networks shortest-path-algorithm shortest-paths
Language:Go 0
arnaudporet / smoosim
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
biological-modeling biological-networks biological-simulation boolean-networks computational-biology continuous-logic dynamical-systems edge-computation edge-computing edge-tuning fuzzy-logic logical-operators modeling networks networks-biology regulatory-networks simulation
Language:R 0
arnaudporet / stream
Streaming over networks
biological-modeling biological-networks computational-biology downstream-paths graph-algorithms graph-analysis graph-traversal graphs network-algorithms network-analysis networks networks-biology path-analysis path-finding pathfinder pathfinding pathfinding-algorithms regulatory-networks upstream-paths
Language:Go 0
NTBEL / PARM
PAR2 Activation and calcium signaling Reaction Model in PySB
systems-biology cell-signalling calcium-signalling biological-modeling pysb par2 biological-models molecular-hyperthermia nanoparticles
Language:Python 0
olledejong / DAISIEsims
Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.
biological-modeling cpp individual-based-modelling r rcpp
Language:R 0
espinosa4hpx / py4hpa
R language for Human Performance Analysis
biological-modeling biomechanics-analysis physiological-signals vo2max
Yevgenialno / Life
biological-modeling
Language:C#