population-dynamics

There are 1 repository under population-dynamics topic.

• fishR-Core-Team / FSA

  FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

  fisheriesfisheries-stock-assessmentstock-assessmentfishpopulation-dynamicsfisheries-managementr
  Language:R 63

• theislab / pseudodynamics

  Dynamic models for single-cell RNA-seq time series.

  single-cell-analysistime-seriessingle-cell-rna-seqpopulation-dynamics
  Language:Jupyter Notebook 39

• sizespectrum / mizer

  Multi-species size-based ecological modelling in R

  rfisheriesecosystem-modelfish-population-dynamicsspecies-interactionsmarine-ecosystemsimulationfisheries-managementpopulation-dynamicssize-structuretransport-equation
  Language:R 35

• PoisotLab / BioEnergeticFoodWebs.jl

  A unified interface for simulations of the Bio-Energetic model on food webs

  food-websecologyecological-modelspopulation-dynamicsbiomass
  Language:Julia 27

• fishR-Core-Team / RFishBC

  This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.

  fishfisheriesstock-assessmentpopulation-dynamicsfisheries-stock-assessmentfisheries-managementr
  Language:R 13

• artificial-life-lab / population-dynamics

  Library to conduct experiments in population dynamics.

  python-3artificial-lifecognitive-sciencepopulation-dynamicslotka-volterralotka-volterra-modellotka-volterra-equationspredator-preypredator-prey-simulationsnon-linear-dynamics
  Language:Python 11
• ReMobidyc

  ReMobidyc / ReMobidyc

  web based multi-agent simulator for individual-based modeling in population dynamics and ecotoxicology

  ecotoxicologymulti-agent-simulationpharopopulation-dynamicssimulator
  Language:Smalltalk 11

• oliviergimenez / capture-recapture-review

  material for a review on capture-recapture methods and questions

  capture-recapturecapture-recapture-datacapture-recapture-modelsecological-modellingpopulation-dynamicsdemography
  9

• cjabradshaw / SahulHuman

  R code for reproducing age-structured models of ancient humans entering Sahul

  human-demographypopulation-dynamicsdemographypalaeo-ecologyarchaeologyminimum-viable-population-sizesettlementpeoplingestablishmentancient-humans
  Language:R 7

• louisgt / SodaPop

  A tool for multiscale forward-time simulation of protein evolution.

  simulationmolecular-evolutionproteinsforward-simulationpopulation-geneticspopulation-dynamicsfitness-landscapecoevolutiondeep-mutational-scanning
  Language:C++ 7

• oliviergimenez / popdyn-workshop

  Website of workshop Quantitative Methods for Population Dynamics in R

  population-dynamicsunmarkedpopbiormarksurvival-estimationoccupancy-modelingmatrix-models
  Language:HTML 7

• jjackson-eco / mammal_weather_lifehistory

  Study on the terrestrial mammals to investigate how weather influences annual abundance changes

  abundancelpiprecipitationtemperaturepopulation-dynamics
  Language:HTML 6
• Simulaciones-de-epidemias

  programandoconro / Simulaciones-de-epidemias

  Simulaciones de epidemias 👾 en poblaciones con mezclas homogéneas 👪 utilizando modelos basados en agentes autónomos 🤖

  shiny-rapprsimulationsepidemiaepidemicsagent-based-simulationpopulation-dynamicspopulation-epidemicsbiological-simulationsrandomnesssimulaciones-de-epidemiaspandemichomogenous-mixmachine-learningbiological-simulationpopulationcovidpopulation-modelagentes
  Language:R 6

• AmeanAsad / stochastic-disease-simulation

  A simulation model for pandemic spread using population dynamics of infectious diseases

  pythonsimulationcovid-19population-dynamicsmodelingscikit-learnscipymatplotlib
  Language:Python 5

• marchtaylor / FLIBM

  FLIBM is individual-based model for the simulation of fish stock dynamics

  rstatsflragent-based-modelfisheriespopulation-dynamics
  Language:R 5

• atyre2 / NRES450_book

  Lecture notes for NRES 450 Biology of Wildlife Populations, University of Nebraska

  textbookecologypopulation-dynamicsecology-model
  Language:TeX 4

• babak2 / HAAMoS

  Hybrid Aggregated Agent‐based Microsimulation of Segregation

  javaagent-based-modelingagent-based-simulationurban-modellingpopulation-dynamicsresidential-segregationsegregation-measuresmulti-scaled-modelinghousing-vacancy-effectsneighborhood-effectshybrid-modelingagent-based-microsimulationagent-based-computational-demographygeographically-referenced-social-simulationsocial-simulationspatial-modelingartificial-societysociospatial-segregation-modelehtnic-mosaic-pattern-simulatorcomplex-systems
  Language:Java 4

• dipan29 / Logistic-Visualizer

  Simple Logistic Model Visualization

  logisticlogistic-modelpopulation-dynamics
  Language:TypeScript 4

• EcoDynIZW / EcoDynIZW.github.io

  We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.

  community-dynamicsdisease-modelingdiseasesecologyecology-modellingpopulation-dynamics
  Language:HTML 4

• garethjns / social-distancing-sim

  Simulating the effect of social distancing on disease spread through a population graph.

  covid-19disease-modelingdisease-spreadnetworkxpopulation-dynamicsreinforcement-learningsimulationsocial-distancing
  Language:Python 4

• gugushvili / predator_prey

  Dataset for predator-prey interaction

  dataexperimentlotka-volterrapopulation-dynamicsteaching-materials
  Language:HTML 3

• jjniev01 / BSGMi

  Built-Settlement Growth Model interpolation (BSGMi) is an interpolative model that allows for the spatial prediction of annual built-settlement (B-S) extents given observed extents at two different time points. Published article DOI 10.1016/j.compenvurbsys.2019.101444

  urbanurban-growthurban-data-sciencepopulationpopulation-dynamicspopulation-projectionssettlement-mappingsettlement
  Language:R 3

• JonasVasconcelos / FiShiny

  Shiny interface for growth model fit

  growth-modelsshiny-appsaicbootstrapchi-square-testfish-biologypopulation-dynamicslength-dataage-databasenon-linear-regressionr-for-everyone
  Language:R 3

• evoplex / model-populationGrowth

  This is a model plugin for Evoplex. It implements a simple model to simulate the spread of infection across a population.

  evoplexevoplex-modelcellular-automatacellular-automatonpopulation-dynamics
  Language:C++ 2

• melnyashka / horizontal_gene_transfer

  Cemracs 2018 project (CIRM, July-August 2018)

  horizontal-gene-transferbiological-simulationspopulation-dynamics
  Language:Python 2

• oliviergimenez / pyrenean-brown-bear-abundance

  Code and data for the estimation of Pyrenean brown bear abundance

  brown-bearcapture-recapturepopulation-dynamicsrobust-design
  Language:HTML 2

• thierrygrimm / population-dynamics

  A collection of computational-biological population dynamics simulations

  computational-biologypopulation-dynamicssimulationmutations
  Language:Jupyter Notebook 2
• vsudbrack.github.io

  vsudbrack / vsudbrack.github.io

  My personal homepage

  personal-websitepopulation-dynamicspopulation-geneticstheoretical-biology
  Language:SCSS 2
• Projet-de-Bachelor

  Benoit-Muller / Projet-de-Bachelor

  Bachelor project: "Stability of linear dynamical systems and application to Lotka-Volterra equations and epidemiology"

  differential-equationsdynamic-systemsbiomathematicslinear-dynamical-systemspopulation-dynamics
  Language:TeX 1

• chus-chus / cellular-automata

  Simulator for the study of genetically stable and mutator cell populations in a cancer setting.

  animationcellular-automatapopulation-dynamicspython
  Language:Python 1

• cjabradshaw / DensityFeedbackSims

  Stochastic simulations of population abundance with known component density feedback on survival to test for ability to return ensemble feedback signal

  compensationdensity-dependencedensity-feedbackpopulation-dynamicscarrying-capacitystationaritylogistic-growthlogistic-growth-modelsgompertzricker-logisticregulationcompensatory-density-feedbacknonstationaritynonstationarynonstationary-time-seriestime-series
  Language:R 1

• ertihelka / ecochaos-rates

  Re-examining the prevalence of chaos in ecological time series

  chaosnonlinear-dynamicspopulation-dynamicstime-series-analysis
  Language:Mathematica 1

• khaylheb99 / Data

  Analysis of various datasets

  continentshealthpopulation-dynamics
  Language:Jupyter Notebook 1

• projectmesadata / syntheticpopulation

  Creates a data pipeline from WorldPop.org so users can build a realistic synthetic population to seed their models.

  agent-based-modelingpopulationpopulation-dynamicsdata-pipelinebinder-jupyter-notebook
  Language:Jupyter Notebook 1

• samuelbx / pyspecies

  Blazing-fast simulation of advanced population dynamics

  population-dynamicsreaction-diffusionsimulationskt-model
  Language:Python 1

• wengngai / NSSF_IBMs

  Spatially explicit individual based models of tree species in the Nee Soon Freshwater Swamp Forest (NSSF) catchment in Singapore

  forestswamphabitat-mismatchhabitat-filteringnichepopulation-dynamicscommunity-assembly
  Language:R 1