Boni Lab's repositories
covid19-reopening-RI-MA-PA
public repository for PSU CIDD (Hanks, Pritchard, Boni) modeling efforts around the coronavirus pandemic
PSU-CIDD-MaSim-Support
Various internal scripts used in conjunction with the malaria simulation across projects.
covid19-attackrate-RI-MA-CT
code for inferring attack rate and vaccination of seropositives in southern New England, first 15 months of pandemic
covid19-vaccine-allocation-RI-MA
Model evaluation of SARS-CoV-2 vaccine allocation in Rhode Island and Massachusetts in Spring 2021
malariaibm-movement-BurkinaFaso-2022
Complete source code and intermediary files to accompany the manuscript published in Scientific Reports.
Temple-Malaria-Simulation
Spatial individual-based model of malaria with a focus on drug resistance evolution.
malariaibm-generation-of-MDR-mutants
Repo for malaria individual-based simulation study of which treatment strategies present more risk in generating multi-drug-resistant mutants earlier
malariaibm-MDA-2018WHOERG
repository with code, output, and figures for manuscript on antimalarial drug-resistance evolution during mass drug administration (MDA). This work was commissioned for a WHO Evidence Review Group (ERG) in September 2018.
malariaibm-spatial-Rwanda-561H
Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.
seroepi-02FL-influenza-vietnam-PCA
Analysis and data for paper on principal components analysis on human antibody profiles to influenza virus
malariaibm-spatial-BurkinaFaso-2021
Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.
malariaibm-spatial-BurkinaFaso-2022
Complete source code and intermediary files to accompany the manuscript.
malariaibm-TACT-2023
Complete source code and config files to accompany the manuscript published in Nature Communications
PSU-CIDD-GIS
Various internal GIS tools used in conjunction with the malaria simulation across projects.
PSU-CIDD-MMC
Configuration and related files for MMC benchmarking
Temple-Kenya
Source files used to study malaria in Kenya using spatial individual-based modeling.